Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00129 CAGGAGAAGATATCAGTCATGACAATTGATATGGCTAGTGAAGTAACTGATCCCAAGTTGGGACTTCCAAATCCTTCTTCACAGTGCTCCACATGCAGTGCCAAAGATTTGAAACATTGTGAAGGTCATTTTGGTGTTATTAAATTTCCGTACACCATAATCCATCCATATTTTCTGTCGGATGTTGTACAAGTTTTGAATAAAATTTGCCCTGGGTGTAAAAATGTAAAGGAAGAAACTGTGTTTCGTCATTCTAAGACGTTAATGGGCGATGGTCAGATTAAAGGGTGGTATCCAAGTGTGAGGTTTAAGATTTCCTCCAATGATTTGTTTAAAAGAAGTGTCATAGTAGCAGAGGTTAAAGAAAGGGTGTCAAGAAAATTTCAAAAGAGAAATTTGAGAGGAGTATTACCTGCTGATTATTGGAATTTTATTCCAAAAGACGATCAGCAAGAAGATGCCTATAATACAGCTACCAGAAGAGTTCTTTCGCATGCCCAGGTCCGTTATCTGTTGAATGATGTAGATCCAAAGTTTATCAAAAGGTTTGTTTCAAGGACTGAATCCCTGTTCCTTAATTGTTTTCCTGTGACGCCAAATAACCATCGTGTCACTGAAGTTACATATGCCTTAACAAATGGCCAGCGATTGGTTTTCGATGAAAGGACTAGGGCTTACAAGAAGTTGGTTGATTTCAGAGGGATAGCTAATGAGTTGAGTTCTCGTGTTTTGGACTGTTTAAAATTTTCCAAGGCAAGCTACAAATCTGAGAAGACGGTCAATAAAGATTTGGATGCTGCCCAAGAGAAAAGGATTAAGGACACTGCAACTAGCTCATCTGGTTTGAGATGGGTCAAAGATGTTGTTTTAGGAAAGCGGAGTGATCATTGTTTCCGTATGGTCGTGGTTGGTGATCCTAACATTAAGCTCAGTGAAGTTGGTATACCCTGTCATGTTGCAGAGAGGCTTCAAGTTTCTGAGAATTTGAATGCTTGGAACATGAAAAAGTTAAGCACCTCTTGTTTTTTACGACTCGTTGAGAAAGGGGAGCTTTTTGTACGTCGAAATGGTCATCTAGTTCGTGTCCGACATGATTTTGAACTTCATATTGGAGACACTATATATAGGCCGCTAAGTGATGGAGATATCATTTTGATTAATAGGCCACCATCTATACACCAGCATTCTCTTATAGCTTTAACTGCAAGGGTCCTTCCTGTGAATTCTGTTATTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGCGATTTTGATGGTGATTGCTTTCATGGGTATGTTCCTCAATCAGTTGATGCCAGAGTAGAGCTCAAAGAGCTTGTTTCTCTAGATAGACAATTAATTAATGGGCAAACTGGTAGAAACCTGCTCTCACTTAGTCATGACAGCTTAACTGCTGCTCATTTGGTGTTGGAGAATGGGGTTTTTTTAGACCTTTTTGAAATTCAGCAGCTGCAAATGTCGTCTTTGCGGCAATTACCATCACCAGCAATTGTAAAATCTTCTTCACCTAATAGTTGTGCCTGGACTGGGAAACAATTATTCAGCATGCTCCTACCTCGGCACTTCAATTATGAAAGTTCTTCTAATAGTGTCGATGTTAAAGATGGCGAACTTATATCTTCAGAAGGGTCCTTTTGGCTTCGTGACGCCAATGGAAACATTTTCCAAAACCTGGTTGAATATTGTGAGGGAAGGACACTTGACTTATTGTATGCGGCTCAGGATGTTCTTTGTGAATGGTTATCTGATAGGGGCTTCACTGTTTCACTTGAAGATTTATACCTCTCTGCTGACTTGCATTCCCAAAAAAACATGATGGATGATATTTTTTATGGTTTGCGAGAAGCAGATCAGACATGTCAGTTCAAACAGTTGATGGTGGATGCTTATCGGGATTTACTTATCGGAGAGAGCGAAGATGATGAAAATCCTGTCTTTATGGAAGTGGAACAGTTATGTCATGAGAAGCAGAAATCTGCTGCTTTGAGTCAGGCTTCCGTTGATGCTTTTAAGTATGTCTTTCGAGACATCCAAAGTTTAGTGTTCAAGTATGCTAGTAAGGATAATTCATTTCTAACGATGTTTAAAGCTGGAAGCAAGGGTAACCTGATAAAACTAGTTCAACACAGCATGTGTCTTGGCTTGCAACATTCGCTTGTCCCATTATCATTTGCTATGCCCCATCAACTCTCTTGTTCTGCATGGAATAATCAAAAGGCGCATGGCTTTCAAAAGGCTGATGGTTCCCCAGATTTTTCCCAGTCTTACATCCCATATGCGGTGGTTGAAAATTCGTTTCTTAGAGGTTTAAATCCTTTGGAGTGTTTTGTTCATTCAGTGACAAATCGAGACAGTTCTTTTAGCGACAATGCTGATCTTCCCGGAACTTTAACTCGTAGACTTATGTTTTTCATGCGAGATTTGAGCACTGCATATGATGGAACAGTGAGAAATGCATATGGGAATCAGATTGTTCAGTTCTTATGTGACATTGATTTAGACTCATCCACTCTTCATGGCAATATTGATGAATTATTTGGGGACAGTGATGGTTCTTGTAATTTCATAGGTGGTCAGCCTCTTGGTTCATTGTCTGCTTGTGCTATATCTGAAGCTGCATATAGTGCTTTGGATCAACCAATCAGCTTACTAGAAGCGTCCCCATTACTAAATTTAAAGAAAGTGTTGGAGTGTGGCTCAAAGAGGAACTTATCCAACCAAACCTTTTCGCTGTTTTTTTCGGAGAAACTAAGAAAGCAAAGGCATGGTTTTGAATATGGAGCCTTAGAAGTTAAGAAACATCTGGAGAGAGTAACATTTGCAGATGTGGTATCGAGTGTCATGATATTCTTCTCTCCACAAACCTGTCGGAAGCCAAATGACAGTCCTTGGGTTTGCCATTTTCATTTACTCAAGGTTGTACAATCTTTAACTATTTATTTTTTCTCATGCTTTTTTGTTCTCTTTTTTGATGAAAACCTGCTCGTTCAGGAAAATTTACGAAAAAGAAGGCTCAGTGTGCGGTCCATCATGGATTCTCTGCACATGAGATGCAACATTTCCGGAAATGAATCTGTTATCAATTCGCCTGTGCAAATGGCATGCAGGAAGTGTGCTGAAGCTGGCACACACAAAGAGGATAGTGAAATATTTTGCTTTACTGCAAATATAGCCGAAAACTCCAAAAATTCAACATTGCCTTTTGAGTCAGTTCGTGATTTGCTGGTTCCTTACCTTCTTGCAACTGTTATAAGTGGGTTTAAAGAAATAAAAAAGGTGGACATTCTATGGAGTGATCACTCAAAAGTGTCGAAACCTCGCCATGATTTTTCTGGCGAACTCTATTTGAAGGTGGAAATGAGTGGAGAGTGTGGTAGAACAAGACCATGGGCTGTTCTAATGAATAATTGTCTTCAAATAATGGATATGATCGATTGGTCCCGAAGTCATCCCGATAACATTCATGACTTCTGTTTGGCACACGGGATCGATGCTGGATGGCATTATTTCCTCAAAAGTTTGGACTCTGCCATATCTGACAGCGGGAAAACTGTACTTCCTGAACATTTGCTGCTTGTAACTAATTGCCTATCAGCTACAGGAGAGTTTGTCGGGTTAAATGCTACCGGAATTGGTCGTCAAAGAGACTATTCTTGGATAAAATCACCCTTTATGCAAGCTTGCTTATCTAATCCTGGTGCTTCCTTCATCAAAGCTGCGAAAGGTGGGGTTGCGGATGATCTTCATGGGAGCCTAGACTCATTGGCATGGGGAAAAATTCTGCCCATGGGAACCGGTTCAGAGTTCGAACTAATTTATTTTGGAAAGGATCATACACTTGACAAGCCAGTTGATGTATTCGAACAACTGAGAAGTCATGCTGTTTTGGATGAGGAGGTTGTAAAGGTTACAATATCCGACCAAAACAAAAAAGCCGATAAATTTGTGTCTCGGTTGTTGCATAAAAAGGGTGGGGCTGCCTTGAACGGATATAAAAAGCTGGAGAGTATATCAAAATCATTCTTGAGAGAAGTTTTGACGCTGAATGATGTTATGAAGCTATCTAAAAAATTGAAGAGCATATTACACAAGTACCCGATTAATCATAGGTTAAATGAAGTGGAGAAGTCAACCTTGTTGATGGCTTTGTATTTTCACCCGCGACGGGATGAAAAAATGGGTGCTGGAGCTCAGGACTTCAAGGTCGGACGACACGCCAAGTATGAAAACACGCGATGCTTTACTGTGGTGCGAACGGATGGGTCAGTAGAAGATTTTTCGTACCGAAAGTGTGTTCTTGGTGCGCTAGAGATAATCGCTCCCAAAAGAGCAAAGAGCTATCAATCAAAATGGCTAAATGACAGTGATTTGTAA 4398 40.15 QEKISVMTIDMASEVTDPKLGLPNPSSQCSTCSAKDLKHCEGHFGVIKFPYTIIHPYFLSDVVQVLNKICPGCKNVKEETVFRHSKTLMGDGQIKGWYPSVRFKISSNDLFKRSVIVAEVKERVSRKFQKRNLRGVLPADYWNFIPKDDQQEDAYNTATRRVLSHAQVRYLLNDVDPKFIKRFVSRTESLFLNCFPVTPNNHRVTEVTYALTNGQRLVFDERTRAYKKLVDFRGIANELSSRVLDCLKFSKASYKSEKTVNKDLDAAQEKRIKDTATSSSGLRWVKDVVLGKRSDHCFRMVVVGDPNIKLSEVGIPCHVAERLQVSENLNAWNMKKLSTSCFLRLVEKGELFVRRNGHLVRVRHDFELHIGDTIYRPLSDGDIILINRPPSIHQHSLIALTARVLPVNSVISLNPLCCSPFRGDFDGDCFHGYVPQSVDARVELKELVSLDRQLINGQTGRNLLSLSHDSLTAAHLVLENGVFLDLFEIQQLQMSSLRQLPSPAIVKSSSPNSCAWTGKQLFSMLLPRHFNYESSSNSVDVKDGELISSEGSFWLRDANGNIFQNLVEYCEGRTLDLLYAAQDVLCEWLSDRGFTVSLEDLYLSADLHSQKNMMDDIFYGLREADQTCQFKQLMVDAYRDLLIGESEDDENPVFMEVEQLCHEKQKSAALSQASVDAFKYVFRDIQSLVFKYASKDNSFLTMFKAGSKGNLIKLVQHSMCLGLQHSLVPLSFAMPHQLSCSAWNNQKAHGFQKADGSPDFSQSYIPYAVVENSFLRGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLSTAYDGTVRNAYGNQIVQFLCDIDLDSSTLHGNIDELFGDSDGSCNFIGGQPLGSLSACAISEAAYSALDQPISLLEASPLLNLKKVLECGSKRNLSNQTFSLFFSEKLRKQRHGFEYGALEVKKHLERVTFADVVSSVMIFFSPQTCRKPNDSPWVCHFHLLKVVQSLTIYFFSCFFVLFFDENLLVQENLRKRRLSVRSIMDSLHMRCNISGNESVINSPVQMACRKCAEAGTHKEDSEIFCFTANIAENSKNSTLPFESVRDLLVPYLLATVISGFKEIKKVDILWSDHSKVSKPRHDFSGELYLKVEMSGECGRTRPWAVLMNNCLQIMDMIDWSRSHPDNIHDFCLAHGIDAGWHYFLKSLDSAISDSGKTVLPEHLLLVTNCLSATGEFVGLNATGIGRQRDYSWIKSPFMQACLSNPGASFIKAAKGGVADDLHGSLDSLAWGKILPMGTGSEFELIYFGKDHTLDKPVDVFEQLRSHAVLDEEVVKVTISDQNKKADKFVSRLLHKKGGAALNGYKKLESISKSFLREVLTLNDVMKLSKKLKSILHKYPINHRLNEVEKSTLLMALYFHPRRDEKMGAGAQDFKVGRHAKYENTRCFTVVRTDGSVEDFSYRKCVLGALEIIAPKRAKSYQSKWLNDSDL 1465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 914834 923132 + Bpe020941.1 Bpe07g00129 105898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00129 1465 CDD RNAP_IV_RPD1_N 2 825 IPR040403 -
Bpe07g00129 1465 Pfam RNA polymerase Rpb1, domain 5 777 1222 IPR007081 GO:0003677|GO:0003899|GO:0006351
Bpe07g00129 1465 SMART rpolaneu7 188 478 IPR006592 GO:0003677|GO:0003899|GO:0006351
Bpe07g00129 1465 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1275 - -
Bpe07g00129 1465 Gene3D - 635 778 IPR038120 -
Bpe07g00129 1465 Gene3D - 287 457 - -
Bpe07g00129 1465 Gene3D RNA polymerase II, clamp domain 5 91 IPR044893 -
Bpe07g00129 1465 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1354 IPR045867 GO:0003899|GO:0006351
Bpe07g00129 1465 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1354 - -
Bpe07g00129 1465 Pfam RNA polymerase Rpb1, domain 2 291 449 IPR000722 GO:0003677|GO:0003899|GO:0006351
Bpe07g00129 1465 Gene3D RNA polymerase Rpb1, domain 3 458 604 IPR042102 -
Bpe07g00129 1465 Pfam Protein of unknown function (DUF3223) 1367 1440 - -
Bpe07g00129 1465 Pfam RNA polymerase Rpb1, domain 3 454 601 IPR007066 GO:0003677|GO:0003899|GO:0006351
Bpe07g00129 1465 Pfam RNA polymerase Rpb1, domain 4 669 728 IPR007083 GO:0003677|GO:0003899|GO:0006351
Bpe07g00129 1465 Pfam RNA polymerase Rpb1, domain 1 15 203 IPR007080 GO:0003677|GO:0003899|GO:0006351
Bpe07g00129 1465 Gene3D RNA polymerase ii 324 376 - -
Bpe07g00129 1465 Gene3D - 1352 1442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00129 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - csv:101214578 1921.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00129 Bpe-Chr7:914834 Bpe15g00974 Bpe-Chr15:19342241 5.50E-08 dispersed
Bpe07g00129 Bpe-Chr7:914834 Bpe02g00428 Bpe-Chr2:2795007 9.46E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40