Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00146 ATGTGGGCGGTAGAGGGGAGAGAGGAGGATGGGGATGGGGGTTTTCTTCGTTTGGCTCATTTCCTTCTTCCTCCTCATCTCGCTTCTTGTCATCATCGTTTACCAGAAATTCTTGTAGTGAAGAGATTGCTCTCCAGTCCATTGAGCGGGAGACCTAGCCTGACAGTTGAATTTTATGCTAAAGTTCATAATAGCTTACAACCTAGAACCCACAACCGAAAATCGGCTCGTCCTCAATTTACAATGATGCCAATAGGAACTCCTAGGGTACCATATAGAACTCCCGGTGAGGGAACTTGGCAGTGGGTTGATTTATGGAATGCTTTATATCGTGAGCGTGTTATTTTTATCGGGCAAAACATAGACGAAGAGTTTAGCAACAAAATATTGGCGACGATGCTATACCTCGACACCATTGATTCTTCCAAAAAGTTATATATGTACATTAATGGTCCTGGCGGAGATTTAACACCGAGCATGTCCATTTATGACACTATGCAAAGCTTGAAGAGCCCTGTTGCCACCCATTGTGTGGGCTATGCCTACAACTTAGCTGCCTTTCTGCTTGCAGCCGGAGAAAAGGGAAGCCGTTTTGCAATGCCTTTGGCAAGAATCGCCTTGCAGTCCCCAGCCGGAGCTGCTCGTGGTCAGGCTGATGATATTCGAAATGAAGCAAATGAGCTTCTAAGAATCAGAGATTACCTTTTCAACGAGCTATCGAGGAAAACAGGGCAGCCAGTCGAAAAGATTAACAAAGACTTGAGTCGGATGAAGCGCTTTAACGCTCAAGAAGCTCTTGAATACGGACTTATCGATCATATTGTCAGGCCGCCTCGAATAAAAGCCGATGCCCCTCGCAAGGATGTAGGAACTGGACTTGGCTAG 885 45.88 MWAVEGREEDGDGGFLRLAHFLLPPHLASCHHRLPEILVVKRLLSSPLSGRPSLTVEFYAKVHNSLQPRTHNRKSARPQFTMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNKILATMLYLDTIDSSKKLYMYINGPGGDLTPSMSIYDTMQSLKSPVATHCVGYAYNLAAFLLAAGEKGSRFAMPLARIALQSPAGAARGQADDIRNEANELLRIRDYLFNELSRKTGQPVEKINKDLSRMKRFNAQEALEYGLIDHIVRPPRIKADAPRKDVGTGLG 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1022524 1030201 - Bpe026042 Bpe07g00146 105915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00146 294 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 50 288 IPR023562 -
Bpe07g00146 294 PRINTS Clp protease catalytic subunit P signature 196 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 PRINTS Clp protease catalytic subunit P signature 144 164 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 PRINTS Clp protease catalytic subunit P signature 253 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 PRINTS Clp protease catalytic subunit P signature 104 119 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 PRINTS Clp protease catalytic subunit P signature 175 192 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 50 288 - -
Bpe07g00146 294 SUPERFAMILY ClpP/crotonase 97 278 IPR029045 -
Bpe07g00146 294 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 86 278 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 CDD S14_ClpP_2 104 274 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe07g00146 294 Pfam Clp protease 101 276 IPR023562 -
Bpe07g00146 294 Gene3D - 87 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00146 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - zju:107406406 442.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00146 Bpe-Chr7:1022524 Bpe11g00141 Bpe-Chr11:1014360 2.99E-46 dispersed
Bpe07g00146 Bpe-Chr7:1022524 Bpe03g00518 Bpe-Chr3:25167374 7.36E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00146 Bpe_Chr07 FPKM 0.993573 1.128206 0.0 0.0 0.981873 2.150674 2.007081 0.0 0.0 0.0