Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00148 ATGCAGCCCAGAGGTGGTGGTGGAAGGGACCCATTTTTTAACTTTGGCAAACCTTTTGCTGGTTTCGGAGGATTTGGGGGCTTTGGTGGTCATCAGAGCTTAATGTCTAATTTCTTTGGGGGAAAGGATCCATTTGATGATCCTTTCTTCGCTCGACCTTTGGGAGGCATGTTTCAGTCAAACATTTTTGGTGCTACTGGAAGTCCTTTTGGACATCCTTTTGGACAACCTTTTGGACAACCTTTTGGACAACCTTCCGGTTTTCTTGAGCATCAAGGGGCAGTATCTCAGGGATCATCCAGGCCAATAATTGAGGAGTTGAACTCTGATGATGAAAATGAAGAGCTAGGTAAAGATAAGGAAGAAAATCCCAGAAAGCATGGAAGGTCAAGTGACAAACCTTACGTTGAGTATCCAGAAGAGGATGTTCAAGATAAAAAGGGCAAATATCTGCAGTATGGAGATGATTATAACAGGCTAAATACTATGCCATCCCATAACCAAGCTCGTAGCTTTACTTTTCAAAGTTCTTCTGTGACATATGGCGGTTCAAATGGTGCATATTACACTTCATCAACAACAAAAAGGACGGGAAGTGATGGTGTGACAATCGAAGAAAGCAAAGAAGCTGACACAACCACACGACAAGCAACTCATCGAATCTCGAGGGGACTCCATAATAAGGGCCATTCTATGACAAGAAAGCTCCATTCAGATGGTAAGGTAGACAGTATGCAAACCTTACATAATTTGAATGAAGATGAGCTAGCTGGTTTTGAAGATGCTTGGAAAGTAAACGGCGGAAATCATTTGGCCGGGTGGAGGGAGAGCAGCAATGGCCACCACGGGCACAATGGCACTCAGCAAGGTCAGATTAGGCAAGGTGGGTGGGCTCTACCTTGCCCCCAGCAATCAGAGAGCACAGAAAGGCTTCTAATGGACAACAGAGACGGACAATGGCCTTGGAAGGTTGCGAGAAATCCGAAAATGGCGGCAGCGCGAACTACGTCGATTGTTTTTCTTGGAATTTTCCGTCCTTATCAGAACAATTTGTTATCGCCTTTCCGTTTGTGTCCAACTGTTTCGAACAACTCCGTGATAGCGTTTCGGTTTGTGGCTCGAGGAATTTGTTTCAGCCGTATTCAGTGCGCCGCGTCGTATTCCGGAGACGATGGGAAAAAGGTTTCAGCTCGGCTTTCGCGGGTCCAGCAGCTATTGCAGGAGGCTGAGGAGCGAGCTTTCTGTTCGGACGACGGGCCCGTCCCTAGAATTACCATCGACCATGTAACCGTGAGTTTTGCCAGAAGTGGAGGTCCAGGTGGTCAGAATGTCAATAAGGTGAACACAAAGGTGGACATGCGGTTCAATGTCAAAAATGCTTATTGGCTAAGTGACAGGATTAGAGAGAAAATTATGCAAATGGAGAAAAATCGTATTAATAAAGATGGGGAGCTTGTGATTTCTTCTACAAAAACTAGAACACAGAAAGGCAACATCGAAGATGCACTTGAAAAACTTCAGGCAATCATTGATGCCGCTTCATATGTTCCACCTCCTCCTTCAGAAGAGCAAAAGAAGAAAATAGAGAAGATGGCTGCTATTGGGGAACAAAAACGCCTCAAAAGCAAGAAGGAACTTTCAAACAAAAAAGCATTTCGAAGAAGTCGAGAAAGTTGGGATTGA 1683 44.86 MQPRGGGGRDPFFNFGKPFAGFGGFGGFGGHQSLMSNFFGGKDPFDDPFFARPLGGMFQSNIFGATGSPFGHPFGQPFGQPFGQPSGFLEHQGAVSQGSSRPIIEELNSDDENEELGKDKEENPRKHGRSSDKPYVEYPEEDVQDKKGKYLQYGDDYNRLNTMPSHNQARSFTFQSSSVTYGGSNGAYYTSSTTKRTGSDGVTIEESKEADTTTRQATHRISRGLHNKGHSMTRKLHSDGKVDSMQTLHNLNEDELAGFEDAWKVNGGNHLAGWRESSNGHHGHNGTQQGQIRQGGWALPCPQQSESTERLLMDNRDGQWPWKVARNPKMAAARTTSIVFLGIFRPYQNNLLSPFRLCPTVSNNSVIAFRFVARGICFSRIQCAASYSGDDGKKVSARLSRVQQLLQEAEERAFCSDDGPVPRITIDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRIREKIMQMEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIEKMAAIGEQKRLKSKKELSNKKAFRRSRESWD 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1046709 1051518 + Bpe020958.1 Bpe07g00148 105917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00148 560 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 435 451 IPR000352 GO:0003747|GO:0006415
Bpe07g00148 560 MobiDBLite consensus disorder prediction 280 300 - -
Bpe07g00148 560 PANTHER MYELOID LEUKEMIA FACTOR 4 311 IPR019376 -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 201 216 - -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 273 300 - -
Bpe07g00148 560 SUPERFAMILY Peptidyl-tRNA hydrolase domain-like 423 514 - -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 535 560 - -
Bpe07g00148 560 Gene3D - 422 558 - -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 118 144 - -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 71 144 - -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 195 218 - -
Bpe07g00148 560 MobiDBLite consensus disorder prediction 90 104 - -
Bpe07g00148 560 Pfam Myelodysplasia-myeloid leukemia factor 1-interacting protein 78 264 IPR019376 -
Bpe07g00148 560 Coils Coil 392 412 - -
Bpe07g00148 560 Pfam RF-1 domain 424 551 IPR000352 GO:0003747|GO:0006415
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00148 - - K15033 tcc:18606361 338.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00148 Bpe-Chr7:1046709 Bpe13g00919 Bpe-Chr13:15153766 1.77E-45 dispersed
Bpe05g00600 Bpe-Chr5:20018075 Bpe07g00148 Bpe-Chr7:1046709 2.78E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g480 . . . . . Bpe07g00148 . . . Cmo16g01089 . . . . . Cpe14g00861 . . . . . . . . Cla10g00299 Cam10g0312 Cec10g0322 Cco10g0315 Clacu10g0309 Cmu10g1148 Cre10g0558 . . Cone6ag0712 Cone9ag0713 Lsi07g01344 . . Cme06g02631 . . . . . . . Bma12g00141 . . . . Cma16g01041 . Car16g00992 . . . . . . . . . . . . . . . . . Csa03g00319 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011191 1 0 0 5 1 0 1 1 1 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 3 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00148 Bpe_Chr07 FPKM 6.250432 6.47676 26.279381 28.128731 8.991192 5.727454 10.608884 28.004572 28.504503 33.489014