Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00171 ATGGAAGCACTGGTGGAGTTAGAACGATTGCAGACGAAAATCCTCGAACGAATATCAAATCTGGAGCTTGCTCTTCTTCCTCGCCATTTCTCTGAGCCTCCCTCTGGCGGCGCGATTGCTGATACCGAAGCTCGACTCTCCGTCATTCTCCGTTCTAACGGAGTACACGAATTCTCTTTCATGAAGGTCCCCTCCGATTACTACGATTTGCCTCTGGAATGCCGACGAGATGTCCTTGGTGCTGCCTCGGTTCATCATCTCTGCAAGAGCATCGTTTTGGTGCGTCGTCTTCTTCGATTGTGTGTGAATACTCAAGCGCAGTCCAGTGTGGTTGATTGCAGTGATCCCAAAAATTCAAAGTACTATATCGTTGTTGTTCAGTATACAGCAAGATTCAATGCTGAAACCGTTAAAAATTTCCTCTATTCACTGAATAATGGCCAGATAGCCAAAAAGAAATTCAACTTGAGACTTGCTCCTGAAGAAACATCAGCAAAGTTGACTGGATACGAACACAATGCAGTGACTTGCATTGGCGGGAAGACAGACATTCCTGTGATATTGGATGAAGCAATAGTGAAACTCAATCCCGATTTCTTCTGGTTGGGTGGTGGTGAAACTGACCTGAAGCTGGGCATACGGACCTCTCAATTCATCAACTTTGTTAAACCTTTCATTTTCAGCTGTAGTGCTGCGTGA 699 45.35 MEALVELERLQTKILERISNLELALLPRHFSEPPSGGAIADTEARLSVILRSNGVHEFSFMKVPSDYYDLPLECRRDVLGAASVHHLCKSIVLVRRLLRLCVNTQAQSSVVDCSDPKNSKYYIVVVQYTARFNAETVKNFLYSLNNGQIAKKKFNLRLAPEETSAKLTGYEHNAVTCIGGKTDIPVILDEAIVKLNPDFFWLGGGETDLKLGIRTSQFINFVKPFIFSCSAA 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1165439 1173012 + Bpe026044 Bpe07g00171 105940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00171 232 Gene3D - 73 230 IPR036754 GO:0002161
Bpe07g00171 232 PANTHER YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1 231 - -
Bpe07g00171 232 Pfam Aminoacyl-tRNA editing domain 112 221 IPR007214 GO:0002161
Bpe07g00171 232 PANTHER UNCHARACTERIZED 1 231 - -
Bpe07g00171 232 SUPERFAMILY YbaK/ProRS associated domain 85 228 IPR036754 GO:0002161
Bpe07g00171 232 CDD YbaK_like 117 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00171 - - - dzi:111289308 333.569
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g523 . Blo03g00166 Bda06g00032 . . Bpe07g00171 . . Cmo06g00797 . . . . . . . . Bhi11g00202 . . . Hepe06g1138 Mch10g1557 . Cla10g00263 Cam10g0270 Cec10g0277 Cco10g0274 Clacu10g0270 Cmu10g1113 Cre10g0521 . . Cone6ag0677 Cone9ag0682 Lsi07g01308 . . Cme06g02577 . . . . . . . Bma12g00639 . . . Cma06g00777 . Car06g00691 . Cpe08g00745 . . . . . . . . . . . . . . . . Csa03g00282 Chy06g02040 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010483 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00171 Bpe_Chr07 FPKM 16.569038 13.792214 13.219095 8.84117 12.670116 7.870555 9.840595 9.59915 8.717976 9.244025