Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00195 ATGGGGAAGCAAGGACCTTGCTGTCACTGTGGAGTTACTAGCACTCCCCTTTGGCGTAATGGGCCTCCAGATAGGCCTGTACTCTGCAATGCATGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCAAACTATACTCCTCTTCATGCGCGTGCTGATCCCGATTTCGAAGATCATGGAATTTCCCGGGTGAAGTACCTGCCTGTAAATAAGAAAAAAGAAGCGAAACTGCAAAAAACAAAGCGGCAAAATGATAATGGAATGGTTGGAGACATTTTTCTCAACGATTATCGCTGTTTCAGCAGCGTTATGGATGAAGACACAAGCAATAGATCGAGTTCTGGATCAGCCATATCCAATTCTGAGAGCTCTGCACAATTTGGCAGTGCAGATGCTAGTGATTTGACAGGACCAGCTCAGTCAATCATTTGGGATACAATGGTGCCGTCGAGGAAGAGGACATGCACGGGCCGACCAAAGCCATCTTCTGTCGAAAAACTTACAAAAGATCTCTATACTCTTTTACACAAACAACAGTCATATTTTTCAGGTTCTTCTGAAGAAGATCTGCTATTTGAGGGTGCAAAGCCATTAGTCTCAGCTGAGATAGTCCACGGGAGTGTTCTCATGAGAAATCCAAGCTCAATAGCTCGAGAAGAGGAATCCGAAGCTAGCTCCCTTTCAGTCGAAAATAAACATTACTCTCAGAATGAGGCCTATTCTTATCCTCCTAATTATTCAGTGCGTAATGAAAATCAGAGCAATAATTCGAGATTTTTGACCCCGAGCAGTGGATTGTTAAAGTGCAGAGACCCAGTAAAAAGGGATAACTCTCAGCAAGAAAAACTGCAAATTATGGCAAACTGGAACTCTCCTTTATGCGATGTTGATTTAAGTGATGTGGTGAACTATGAAGAGTTTACGAGGCAATTGACAAATGAAGAACAACAACAACTACTCAAGTATCTGCCTCCTACCGAGGCTGCTAAACTTGCCGACGGGCTAATGCAAATGTTTGAAAGTCCACAATTTAAGGAGAACCTGAATTCCTTCCAGCAATTGTTAGCAGAAGGGGTCTTTGATTTCTCCCTTTCTGGTGCAAAAAAAGAAGTTTGCAGGACTTTGAGCAAGCTTGCATTGTACAATCTGTCAAAATCCAAATGGGTGGAACATTACCACCAACTCAAGATATGTAAAAATGGTGGACAGTCTTTGGTTCATCTCACAGATCCTGCAAAATCAATTACTATCGTTAATCCAGTCAGATCCCGGGATAACCAAAATAAAAATTCTTCAGATTCAAGAACGACTACGATGAAGGGCACAAAAGGGACTATGATCTCGAAAGCAAGCTTTGAAAATAAGGAATACCTAGATAATGAAGGTTCTTGCTTCAGTCCGAGAAGCCTCTTCGCCTTACCTCCGGAAGGAAGCTCACTTGTGTTTGAAAATTTAAATTTTGCTGCCGAAGAAAGTTCAGATCAAGATCTACTGCTTCATGTGCCGTCGAATACCTCCTTTCCACAGGCAGAGCTCCTTTACCCTCTGAATCATGGCACTCAACTGGCAAGCACTAGTAGTAGCTCAGCTCATCCACATTTTCTCCACCATTGA 1614 42.81 MGKQGPCCHCGVTSTPLWRNGPPDRPVLCNACGSRWRTKGTLANYTPLHARADPDFEDHGISRVKYLPVNKKKEAKLQKTKRQNDNGMVGDIFLNDYRCFSSVMDEDTSNRSSSGSAISNSESSAQFGSADASDLTGPAQSIIWDTMVPSRKRTCTGRPKPSSVEKLTKDLYTLLHKQQSYFSGSSEEDLLFEGAKPLVSAEIVHGSVLMRNPSSIAREEESEASSLSVENKHYSQNEAYSYPPNYSVRNENQSNNSRFLTPSSGLLKCRDPVKRDNSQQEKLQIMANWNSPLCDVDLSDVVNYEEFTRQLTNEEQQQLLKYLPPTEAAKLADGLMQMFESPQFKENLNSFQQLLAEGVFDFSLSGAKKEVCRTLSKLALYNLSKSKWVEHYHQLKICKNGGQSLVHLTDPAKSITIVNPVRSRDNQNKNSSDSRTTTMKGTKGTMISKASFENKEYLDNEGSCFSPRSLFALPPEGSSLVFENLNFAAEESSDQDLLLHVPSNTSFPQAELLYPLNHGTQLASTSSSSAHPHFLHH 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1343258 1347400 + Bpe021005.1 Bpe07g00195 105964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00195 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 289 401 IPR044867 -
Bpe07g00195 537 Gene3D - 283 374 IPR038108 -
Bpe07g00195 537 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Bpe07g00195 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Bpe07g00195 537 MobiDBLite consensus disorder prediction 420 444 - -
Bpe07g00195 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 537 IPR044589 -
Bpe07g00195 537 PANTHER GATA TRANSCRIPTION FACTOR 26 1 537 - -
Bpe07g00195 537 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 Pfam Asx homology domain 277 361 IPR028020 -
Bpe07g00195 537 MobiDBLite consensus disorder prediction 110 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00195 - - - mesc:110629577 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00195 Bpe-Chr7:1343258 Bpe06g00027 Bpe-Chr6:313581 4.96E-09 dispersed
Bpe08g01446 Bpe-Chr8:15207547 Bpe07g00195 Bpe-Chr7:1343258 0 transposed
Bpe05g00554 Bpe-Chr5:19678070 Bpe07g00195 Bpe-Chr7:1343258 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00427 CCT,ECH 14 325 C2C2-Gata Transcription Factor Family AT5G66320 51.3 1.4e-67 253.4
Bpe06g00027 CCT,ECH 4 297 C2C2-Gata Transcription Factor Family AT5G66320 50.6 2.0e-61 233.0
Bpe06g00027 CCT,ECH 44 297 C2C2-Gata Transcription Factor Family AT3G51080 51.1 6.6e-51 198.0
Bpe08g01446 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 51.8 3.4e-129 458.8
Bpe07g00195 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 3.6e-123 438.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21604 PF13919 ASXH 4.50E-09 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00195 Bpe_Chr07 FPKM 7.151021 8.198739 2.773761 3.025093 44.235817 42.96352 44.76273 4.613729 4.686916 4.598773