Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00195 ATGGGGAAGCAAGGACCTTGCTGTCACTGTGGAGTTACTAGCACTCCCCTTTGGCGTAATGGGCCTCCAGATAGGCCTGTACTCTGCAATGCATGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCAAACTATACTCCTCTTCATGCGCGTGCTGATCCCGATTTCGAAGATCATGGAATTTCCCGGGTGAAGTACCTGCCTGTAAATAAGAAAAAAGAAGCGAAACTGCAAAAAACAAAGCGGCAAAATGATAATGGAATGGTTGGAGACATTTTTCTCAACGATTATCGCTGTTTCAGCAGCGTTATGGATGAAGACACAAGCAATAGATCGAGTTCTGGATCAGCCATATCCAATTCTGAGAGCTCTGCACAATTTGGCAGTGCAGATGCTAGTGATTTGACAGGACCAGCTCAGTCAATCATTTGGGATACAATGGTGCCGTCGAGGAAGAGGACATGCACGGGCCGACCAAAGCCATCTTCTGTCGAAAAACTTACAAAAGATCTCTATACTCTTTTACACAAACAACAGTCATATTTTTCAGGTTCTTCTGAAGAAGATCTGCTATTTGAGGGTGCAAAGCCATTAGTCTCAGCTGAGATAGTCCACGGGAGTGTTCTCATGAGAAATCCAAGCTCAATAGCTCGAGAAGAGGAATCCGAAGCTAGCTCCCTTTCAGTCGAAAATAAACATTACTCTCAGAATGAGGCCTATTCTTATCCTCCTAATTATTCAGTGCGTAATGAAAATCAGAGCAATAATTCGAGATTTTTGACCCCGAGCAGTGGATTGTTAAAGTGCAGAGACCCAGTAAAAAGGGATAACTCTCAGCAAGAAAAACTGCAAATTATGGCAAACTGGAACTCTCCTTTATGCGATGTTGATTTAAGTGATGTGGTGAACTATGAAGAGTTTACGAGGCAATTGACAAATGAAGAACAACAACAACTACTCAAGTATCTGCCTCCTACCGAGGCTGCTAAACTTGCCGACGGGCTAATGCAAATGTTTGAAAGTCCACAATTTAAGGAGAACCTGAATTCCTTCCAGCAATTGTTAGCAGAAGGGGTCTTTGATTTCTCCCTTTCTGGTGCAAAAAAAGAAGTTTGCAGGACTTTGAGCAAGCTTGCATTGTACAATCTGTCAAAATCCAAATGGGTGGAACATTACCACCAACTCAAGATATGTAAAAATGGTGGACAGTCTTTGGTTCATCTCACAGATCCTGCAAAATCAATTACTATCGTTAATCCAGTCAGATCCCGGGATAACCAAAATAAAAATTCTTCAGATTCAAGAACGACTACGATGAAGGGCACAAAAGGGACTATGATCTCGAAAGCAAGCTTTGAAAATAAGGAATACCTAGATAATGAAGGTTCTTGCTTCAGTCCGAGAAGCCTCTTCGCCTTACCTCCGGAAGGAAGCTCACTTGTGTTTGAAAATTTAAATTTTGCTGCCGAAGAAAGTTCAGATCAAGATCTACTGCTTCATGTGCCGTCGAATACCTCCTTTCCACAGGCAGAGCTCCTTTACCCTCTGAATCATGGCACTCAACTGGCAAGCACTAGTAGTAGCTCAGCTCATCCACATTTTCTCCACCATTGA 1614 42.81 MGKQGPCCHCGVTSTPLWRNGPPDRPVLCNACGSRWRTKGTLANYTPLHARADPDFEDHGISRVKYLPVNKKKEAKLQKTKRQNDNGMVGDIFLNDYRCFSSVMDEDTSNRSSSGSAISNSESSAQFGSADASDLTGPAQSIIWDTMVPSRKRTCTGRPKPSSVEKLTKDLYTLLHKQQSYFSGSSEEDLLFEGAKPLVSAEIVHGSVLMRNPSSIAREEESEASSLSVENKHYSQNEAYSYPPNYSVRNENQSNNSRFLTPSSGLLKCRDPVKRDNSQQEKLQIMANWNSPLCDVDLSDVVNYEEFTRQLTNEEQQQLLKYLPPTEAAKLADGLMQMFESPQFKENLNSFQQLLAEGVFDFSLSGAKKEVCRTLSKLALYNLSKSKWVEHYHQLKICKNGGQSLVHLTDPAKSITIVNPVRSRDNQNKNSSDSRTTTMKGTKGTMISKASFENKEYLDNEGSCFSPRSLFALPPEGSSLVFENLNFAAEESSDQDLLLHVPSNTSFPQAELLYPLNHGTQLASTSSSSAHPHFLHH 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1343258 1347400 + Bpe021005.1 Bpe07g00195 105964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00195 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 289 401 IPR044867 -
Bpe07g00195 537 Gene3D - 283 374 IPR038108 -
Bpe07g00195 537 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Bpe07g00195 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Bpe07g00195 537 MobiDBLite consensus disorder prediction 420 444 - -
Bpe07g00195 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 537 IPR044589 -
Bpe07g00195 537 PANTHER GATA TRANSCRIPTION FACTOR 26 1 537 - -
Bpe07g00195 537 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Bpe07g00195 537 Pfam Asx homology domain 277 361 IPR028020 -
Bpe07g00195 537 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00195 Bpe-Chr7:1343258 Bpe06g00027 Bpe-Chr6:313581 4.96E-09 dispersed
Bpe08g01446 Bpe-Chr8:15207547 Bpe07g00195 Bpe-Chr7:1343258 0 transposed
Bpe05g00554 Bpe-Chr5:19678070 Bpe07g00195 Bpe-Chr7:1343258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21604 PF13919 ASXH 4.50E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00195 - - mesc:110629577 645.58