Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00211 ATGACGGATTACAGCTTATCGCCGTCGACGATGCCCAATCTCTGGGCCGATGTCGATTCAGGGATGGATGTTGCCACCAGATCTGATTTCTTTGCATCTGACCCTTTCAAAACAATTTCTCTCACGCAGCCATCGTATGTTCCGACCACTTTCAGCCAGGAGACTCTGCAACGCCGCCTTCAGGCTCTGATCGACGGCGCATGCGAAAACTGGACCTACGCCATTTTCTGGCTGTTCTCCCATGATTTTTCCGACACTTCGGTTTTAGTGTGGGGAGATGGATACTACAAAGGGGAGGGTAAGAAAGGAAAAGGGAAAGCCAATGTGACGGTGACGTCTCTGGCGGAACAAGAGCGCCGGAAGAAAGTTCTATGGGAGCTGAATTCGTTGATTTCCAGCTCTCCGGCTACCGTGGACAACGTAGTGGACGAAGAGGTTACTGACACCGAGTGGTTCTTCTTGTTTTCAATGACTCAGAGGTTCGTCAACGGAGTTGGGTTACCCGGCCAGGTGTTTTGCAATTCCACTTCCTTTTGGGTTTCCGGCGCCGACTGGCTGATACATTCGTCGTTTGATCGCGCTCGCCAGGGTCACAGTTTTGGTTTGGAGACGATGGTTTGCTTACCGGTGGCGAACGGAGTCGTCGAACTGGGGTCGACTGAGCTGATTTACCGTAGCTCTGAGTTGATGAATAAGGTTAGAGATCTGTTTAACGTAAATAATGTCAAAGTCTGTTCTTGGTCAGCGATGAACTCCGGCGATGATTATGAAACAGATCCATCGCCGTTCTGGATTAGTGGCTCACCGAGCGACATGAAAATCTCTCCTCCGACGAAGCAAATTCATTTCGAAGACCCTAGCTCCAGTAGTTTAACAGAAAATCCAGCATATTTTCAACAGATGAAGCCTGAATCCAGCAAGAATCTAGATTTCGGAGAAAGTACGAGGAGCTACTCCCAAATCGGATGGGAGGAGAAGAAATCTCCGGTATCTCGTTGCAACAACGACGACAAGATAGTTTCATTCACTTCCGGCGTGGTACCGCCGTCTTCCGTTGGCATGAAATCACCCGATTCCGATCATTCTAATCTGGAAGCTCCAGCCATTCGCGAGGTGGAGAGTAGCAGAGTTACAGAACCGGAAAAACGCCCCAGGAAAAGAGGCCAGAAACTAGGGAACGAAAGAGAAGAGCCATTAAACCATGTAGAGGCAGAACGACAACGCCGGGAAAATCTAAACCAGAAATTCTGCGCTCTACGCTCCGTCGTTCCAAAAGTTACAAAACTGGACAAAGCCTCCCTTCTCGGCGACGCCATATCCTACGTCAAAGACCTCGAGAAAAAGCTTCAAATTGCAAATTCAAAAAAAGAACAACTCCAACAGAATCTAAATCTTTTGAAAAAAACCCAGATAAACTCCAAACCAACATCTCCTCCGGCTGAGAAAAACTCAATCATGCTGTCTGCAATGAATATAGAGGTGAAGCTGATGGGTTTGGACGTCATGATCAGAATACAATGCAGCAAGAACCATCCAGCTGCGACATTAATGGTAGCTCTAAAAGCACTGGATTTGGAGATGCAACATGGCAGTGTTTCAGTGGTGAACGATTTCATGATTCTTCAAGCTACTGTGAAAATGGGCACGAGATTATACGCTGAGGAGCAGCTTAAATTTGAACTGTTAAACAAAATAAGCGAATTCCCATAA 1710 47.19 MTDYSLSPSTMPNLWADVDSGMDVATRSDFFASDPFKTISLTQPSYVPTTFSQETLQRRLQALIDGACENWTYAIFWLFSHDFSDTSVLVWGDGYYKGEGKKGKGKANVTVTSLAEQERRKKVLWELNSLISSSPATVDNVVDEEVTDTEWFFLFSMTQRFVNGVGLPGQVFCNSTSFWVSGADWLIHSSFDRARQGHSFGLETMVCLPVANGVVELGSTELIYRSSELMNKVRDLFNVNNVKVCSWSAMNSGDDYETDPSPFWISGSPSDMKISPPTKQIHFEDPSSSSLTENPAYFQQMKPESSKNLDFGESTRSYSQIGWEEKKSPVSRCNNDDKIVSFTSGVVPPSSVGMKSPDSDHSNLEAPAIREVESSRVTEPEKRPRKRGQKLGNEREEPLNHVEAERQRRENLNQKFCALRSVVPKVTKLDKASLLGDAISYVKDLEKKLQIANSKKEQLQQNLNLLKKTQINSKPTSPPAEKNSIMLSAMNIEVKLMGLDVMIRIQCSKNHPAATLMVALKALDLEMQHGSVSVVNDFMILQATVKMGTRLYAEEQLKFELLNKISEFP 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1471440 1473149 - Bpe021022.1 Bpe07g00211 105980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00211 569 Pfam Helix-loop-helix DNA-binding domain 400 446 IPR011598 GO:0046983
Bpe07g00211 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 467 IPR036638 GO:0046983
Bpe07g00211 569 Coils Coil 442 469 - -
Bpe07g00211 569 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 237 IPR025610 -
Bpe07g00211 569 MobiDBLite consensus disorder prediction 342 402 - -
Bpe07g00211 569 SMART finulus 402 451 IPR011598 GO:0046983
Bpe07g00211 569 MobiDBLite consensus disorder prediction 342 358 - -
Bpe07g00211 569 PANTHER MYC 300 566 IPR045084 GO:0003700|GO:0006355
Bpe07g00211 569 Gene3D - 388 474 IPR036638 GO:0046983
Bpe07g00211 569 PANTHER TRANSCRIPTION FACTOR MYC2 42 266 - -
Bpe07g00211 569 PANTHER TRANSCRIPTION FACTOR MYC2 300 566 - -
Bpe07g00211 569 MobiDBLite consensus disorder prediction 364 402 - -
Bpe07g00211 569 PANTHER MYC 42 266 IPR045084 GO:0003700|GO:0006355
Bpe07g00211 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00211 K13422 MYC2; transcription factor MYC2 - rcu:8283024 547.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00211 Bpe08g00900 CCT
Bpe07g00211 Bpe08g00900 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01091 Bpe-Chr4:8552447 Bpe07g00211 Bpe-Chr7:1471440 1.47E-13 dispersed
Bpe04g01092 Bpe-Chr4:8585482 Bpe07g00211 Bpe-Chr7:1471440 3.24E-12 dispersed
Bpe05g01049 Bpe-Chr5:23023344 Bpe07g00211 Bpe-Chr7:1471440 4.16E-55 dispersed
Bpe07g00211 Bpe-Chr7:1471440 Bpe08g00833 Bpe-Chr8:10483940 0 dispersed
Bpe07g00211 Bpe-Chr7:1471440 Bpe11g00336 Bpe-Chr11:2441302 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001444 2 2 4 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 3 1 2 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21607 PF14215 bHLH-MYC_N 2.50E-48 CL0161 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00211 Bpe_Chr07 FPKM 50.934471 56.095722 69.141029 67.852882 55.571384 44.066856 59.553913 66.232506 69.89167 63.956661