Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00216 ATGGGGAAAGGCAAACGAGATGCCCAAACCAAAGCTACTGTCGAAGATGCAGCCGTTTCGGCTTCTCCCAGCGTCTTCCAAACCATATTTGGCGACATCGCGGAAGGGAACGCTGGCGTCTCCATTTTTTCCGAAGCTAATCCCTTTCGTAGAAAACTCAAGGAGTCTGAAAGTGCTGTTAATATCGCCGCGAGCCCTGATGTCGGAGAAGTGAAGAAGAGGAAGAGAGATAAAGAGACGAAGAATGAGAGTTTTTCAGATTCTGTCGATGTAGATGTTGCGACCCCGTTGCAGTTTGGTAAAATTAAGAAGAAGAAATTGCGTATTCCTGATTCTGTTGACGATAGTTTCGAAGTAGACAATGGAGGAAACCCTAATTTAAGTTCTATTGTAGACAGTAGGACGAAAAAAGACAAAAGCAGAAAAGGGGAAGGTAATAATCGTAATTCAGATCCGAGATTGATAGCAACAGGTGGACGGAGTAACAGCGATTTGGGAAAACCCGATGGTGGAAGAAAGGAAGTAGCGAGTAAAGGAATGGTAATGCACAAGGGAAAGAGAAAGAGAGAGGAGCTTGAGAAGGACTATGAAACGAGGAAGTATGATGTAGTGGGAGAAGCTGAGAAAAGTGTAGGTGGTAAAATTGTGGGAGAGAAGAGGAAAGTAGTTGACAATCCTGCTGATCTGCTGGTTTCTAAGGAAGGCTTTGATGATGAAGACAAGCTTTTGAGAACGGTGTTTGTTGGTAATTTGCCGTTGAAGGTGAAGAAGAAAGCTTTGTTGAAGGAATTTAGCCAATTTGGCGAGATTGAATCCGTGAGGATTCGGTCCGTAGCTGTCATAGATAGCAAACTATCGAAAAAAGGGGCAATCATAACCAAGCAAATCAATGATTCCGTAGACAGTGTACATGCATACATTGTTTTCAAAACAGAGCAGTCGGCATATGCTTCTTTGTCATATAACATGGCCGTGTTTGCAGGAAATCATATTCGTGTAGACCGGGCATGCCCACCTCGAAAGAAGCTGAAAAGTGAGAATGCTCCAATATATGATCACAAAAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTGACGGATGAAGAATTGTATCAACTGTTTTGTGGAATCGACACTGTTGGATCCAGCACTGAAGCAGTCCGAGTAATTAGAGATCCTCATACATATATCGGAAAGGGCTTTGCATACGTTTTATTTAAAACAAGGCAAGCAGCCAGTATGATTGTTAAAAGGCGGAACTTAAAGTTAAGAGAGCGGGACCTGAGGCTCTTTCAGGCCAAGCCTAACTTGACTCCATCCAAGAGACTGAAGGAATCAGTTTCACTGGATGGTGCTTCCCCAGCAAAGTTAGCCAGGATAGACAGCGGCAGGGTTGAAAAGACAAAAACACGCTTGTCTTATCAGGGCTTGCAAGCCAGCAAATCTGGTGTTCAAAAAAAGATTAGCATGAAAAAGGCAGTGCCTGAGAAGTCAAAGCCGAAATTGAAGCGAGAGAAGCCGGTGGTGCAGAAGGGGAAAAGACCAGCTGTTGCAGCCAGGAAGGCCAAAGCAAATGCAATGAAGGAAGGCCTTGCGATGAACTCAAAACCAAGTGAGATGAAGAGGAAATTGGACAGCCGAACGCCAGAGAGTTCTCGACCCAACAAGAAAGTGAAGAAATTTAGGTAA 1692 43.91 MGKGKRDAQTKATVEDAAVSASPSVFQTIFGDIAEGNAGVSIFSEANPFRRKLKESESAVNIAASPDVGEVKKRKRDKETKNESFSDSVDVDVATPLQFGKIKKKKLRIPDSVDDSFEVDNGGNPNLSSIVDSRTKKDKSRKGEGNNRNSDPRLIATGGRSNSDLGKPDGGRKEVASKGMVMHKGKRKREELEKDYETRKYDVVGEAEKSVGGKIVGEKRKVVDNPADLLVSKEGFDDEDKLLRTVFVGNLPLKVKKKALLKEFSQFGEIESVRIRSVAVIDSKLSKKGAIITKQINDSVDSVHAYIVFKTEQSAYASLSYNMAVFAGNHIRVDRACPPRKKLKSENAPIYDHKRTVFVGNLPFDVTDEELYQLFCGIDTVGSSTEAVRVIRDPHTYIGKGFAYVLFKTRQAASMIVKRRNLKLRERDLRLFQAKPNLTPSKRLKESVSLDGASPAKLARIDSGRVEKTKTRLSYQGLQASKSGVQKKISMKKAVPEKSKPKLKREKPVVQKGKRPAVAARKAKANAMKEGLAMNSKPSEMKRKLDSRTPESSRPNKKVKKFR 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1521277 1524657 + Bpe021027.1 Bpe07g00216 105985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00216 563 SMART rrm1_1 356 432 IPR000504 GO:0003723
Bpe07g00216 563 SMART rrm1_1 245 334 IPR000504 GO:0003723
Bpe07g00216 563 CDD RRM1_RBM34 244 334 IPR034220 -
Bpe07g00216 563 SUPERFAMILY RNA-binding domain, RBD 237 345 IPR035979 GO:0003676
Bpe07g00216 563 MobiDBLite consensus disorder prediction 484 563 - -
Bpe07g00216 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 338 IPR000504 GO:0003723
Bpe07g00216 563 MobiDBLite consensus disorder prediction 132 148 - -
Bpe07g00216 563 MobiDBLite consensus disorder prediction 55 90 - -
Bpe07g00216 563 CDD RRM2_RBM34 356 432 IPR034221 -
Bpe07g00216 563 Gene3D - 240 343 IPR012677 -
Bpe07g00216 563 MobiDBLite consensus disorder prediction 110 192 - -
Bpe07g00216 563 PANTHER RNA-BINDING PROTEIN 34 44 562 - -
Bpe07g00216 563 MobiDBLite consensus disorder prediction 536 557 - -
Bpe07g00216 563 MobiDBLite consensus disorder prediction 166 192 - -
Bpe07g00216 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 421 IPR000504 GO:0003723
Bpe07g00216 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 278 IPR000504 GO:0003723
Bpe07g00216 563 Gene3D - 350 450 IPR012677 -
Bpe07g00216 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 436 IPR000504 GO:0003723
Bpe07g00216 563 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 44 562 - -
Bpe07g00216 563 MobiDBLite consensus disorder prediction 68 86 - -
Bpe07g00216 563 SUPERFAMILY RNA-binding domain, RBD 351 442 IPR035979 GO:0003676
Bpe07g00216 563 MobiDBLite consensus disorder prediction 491 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00216 K14837 NOP12; nucleolar protein 12 - zju:107430535 497.278
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00216 Bpe-Chr7:1521277 Bpe05g01075 Bpe-Chr5:23258859 3.76E-09 dispersed
Bpe07g00216 Bpe-Chr7:1521277 Bpe10g00710 Bpe-Chr10:13501555 1.90E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00216 Bpe_Chr07 FPKM 12.029865 15.379023 0.72297 0.921579 0.848762 0.544927 0.504381 4.018053 3.512976 3.771198