Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00217 ATGGCAGAAACTACGACCATTTGTGATCAAAAGGATGATGGTTTTTTGAAAAGCTCCAAGGATCAGAAATTGGATGTGTATGTATGGGACATGGATGAAACTCTTATATTGCTCAAGTCTTTGTTGAATGGGACATATGCAGAGTCTTTTGGTGGCTCAAAGAATGTACAAAAGGGTTTAGAAATTGGCAGAATGTGGGAGAATCACATTCTTGATTTATGTGACAATTACTTCTTCTATGAACAAATAGAGAACTATAACCAGCCTTTTCTCGAGTGCTTTTGCGAATATGATGATGGTCGAGATCTATCTAGCTATGATTTTAAGCATGATGGGATTAATGAACCATGTGACGAAGCTAACCGGAGAAAACTAGCTTACAGGCACCGCGCAATAGCTGATAAATACAAGCAGGGTTTGCACAATGTATTTAATCCAGTCATGGTGAAGCTCTTGGATGAATTATATGAAGTTACTGATTTTTATACTGAGAGATGGCTCTCTTCAGCACGAACCTTCTTGGAGGAGTGCGCTATTGATGAAGATGTATCCGGCCTTGTCTCGACTGATGGAACCCTTGATTCTGCTGCCAAAAGGCACTCACATGTCCATGTTTTAGTTACTTCTGGATCATTAATACCCAGCGTAGTCAAATGTTTACTCTTTCGATTCGACAAAATAATAACACACGACAACATCTATAGCGCCTGGGAAGTAGGGAAACTGCAATGTTTTCGATGGATCAAAGAGCGTTTCAATCACCCAAATGTCCGTTTTTGCGCAATTGGTGATGGATGGGAGGAGTGTGAGGCTGCTCAGTCAATTGGCTGGCCTTTTGTTAAGATTGAATTGCAGCCAGGAAGTTCTCTCAAGTTTCCGGGTCTCACAATGAGAACGCTGGGCCATTATTTTGCTATGGTTTATGAAAGTGAGGAGGCTCAAAACAACCAAAATTCAGCTGCTGAATTGGAGAAATGA 978 40.9 MAETTTICDQKDDGFLKSSKDQKLDVYVWDMDETLILLKSLLNGTYAESFGGSKNVQKGLEIGRMWENHILDLCDNYFFYEQIENYNQPFLECFCEYDDGRDLSSYDFKHDGINEPCDEANRRKLAYRHRAIADKYKQGLHNVFNPVMVKLLDELYEVTDFYTERWLSSARTFLEECAIDEDVSGLVSTDGTLDSAAKRHSHVHVLVTSGSLIPSVVKCLLFRFDKIITHDNIYSAWEVGKLQCFRWIKERFNHPNVRFCAIGDGWEECEAAQSIGWPFVKIELQPGSSLKFPGLTMRTLGHYFAMVYESEEAQNNQNSAAELEK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1526429 1544848 - Bpe021028.1 Bpe07g00217 105986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00217 325 SUPERFAMILY HAD-like 23 282 IPR036412 -
Bpe07g00217 325 Gene3D - 25 291 IPR038102 -
Bpe07g00217 325 PANTHER EYES ABSENT 15 308 IPR028472 GO:0004725
Bpe07g00217 325 TIGRFAM EYA-cons_domain: EYA conserved domain 25 300 IPR006545 GO:0007275
Bpe07g00217 325 PANTHER DEVELOPMENTAL PROTEIN EYES ABSENT 15 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00217 - - K17620 vvi:100247200 439.499
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00217 Bpe_Chr07 FPKM 3.68718 4.771953 11.783051 11.250322 4.151441 2.094568 2.987943 0.0 0.0 0.245227