Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00227 ATGGTTTGCACTGCCAGTGATTTGCAGGGGTGGAAAGACTTTCCGAAAGGCCTCCAAGTTCTTCTCCTCGATGGCCACGCCGATTCTGCAAATGAAATAAGATCCAAGCTTGAAGAAATGGAGTATATTGTTTACACATATCGAGACGAGAATGAAGCTCTCTCGGCAATTGCAAGCAAAAACGCAACATTTCATGTTGCCATCGTTGAGGTGAGTGCTAGTAATTGTGAAGGAAGTTTCAAGTTTTTGGAGTCTGCAAAGGACTTGCCAACTGTTATGACTTCTAATTTTGATTGCCTAAATACGATGATGAAGTGCATAGCTCTCGGCGCAGTTGAGTTTCTACGTAAACCACTTTCCGAGGACAAACTTAGGAACATTTGGCAGCATGTTCTTCACAAGGCGTTCAATGCAGGGGAGGGCAGACTCTCGGTTTCTTTAAAGCCGATCAAAGAATCAGTACTATCCATACTTCAACTCCGAGCAGAAAATGGAGAAGATACAATGCAAATATCGGCAGAAACTGATGTTTTGTCTGAGAAAAATGGAGAAGAGAAGTACCCAGAAGGTAGTGATCACTATCCTGCCCCTTCAACCCCGCAATTAGGAGGGCAATTAGTGGACGATGGGGATTGTCAAGAACAGTCTAACCATTCATTAGAGAAATCTGTCGACATTATCTGCGATGATTCACCTGTTGAAGACACTCTTCAAGTTGGACAACTCGGGTTATCTGAAATGAAAGAAGTGAAAGTGGAAGAAGAGTATACTAATCTTCATATTCAGAACACCGATAACAATGGTGAAAACGTGATTAAAACAACTGATCTCGATACTTTGTGTAGGACAAGACCTAACCGGAAGAAAATCAAGGTCGATTGGACATCTGAGCTACACAAAAAGTTTGTGAAGGCAGTAGATCAATTAGGCATCGATCAAGCAATTCCTTCGCGAATACTTGAACTAATGAAAGTGGAAGGTTTGACAAGGCATAATAAGTACCGGATGCAAAGGAGACAAATCTTGCCAAAGGAAGAAGATACTGGATGGACAAACACGAAAGACCCGACGAGGAGGACTTGCACTTACTACCCGCAAAGGCCTATAATGGCCTTTCCGCCATATTATATTAACAATTACAATTACAATTACGATCTGCAGAAACTCACAAGCCCGGTTTATCCGATCTGGGGACAAACCGGAGCTCATCGAGGGGGAGTTCATCCATGGACCCCGCCTCCCTATCATCCTCATTGGCCACCTCTCGATGCTTGGCATTGGCGAACTTCACAGGAGATACATGCTGACGCATGGGGTTGCCCCATCATGCCTCCCCCTCATGGTGCTTATTCTACTTATTCCCGAAACATTTCAAGTTACCCCGACTCCCGGGCAGTTGATAATGGCTTTTCCATGACACATACATCAGTCGACCTTCAACCGGATGAGGAAGTAATAGACATGGTTGTGAAAGAAGCAATGAGCAAACCATGGCTGCCTCTTCCTTTGGGGCTTAAGCCTCCTTCAACTGAGAGTGTTTTGACTGAGCTCTCCCGGCAAGGCATCTCCACCGTCCCTTCTCACATCACCGGCTCTCGACCACGCTGA 1608 44.96 MVCTASDLQGWKDFPKGLQVLLLDGHADSANEIRSKLEEMEYIVYTYRDENEALSAIASKNATFHVAIVEVSASNCEGSFKFLESAKDLPTVMTSNFDCLNTMMKCIALGAVEFLRKPLSEDKLRNIWQHVLHKAFNAGEGRLSVSLKPIKESVLSILQLRAENGEDTMQISAETDVLSEKNGEEKYPEGSDHYPAPSTPQLGGQLVDDGDCQEQSNHSLEKSVDIICDDSPVEDTLQVGQLGLSEMKEVKVEEEYTNLHIQNTDNNGENVIKTTDLDTLCRTRPNRKKIKVDWTSELHKKFVKAVDQLGIDQAIPSRILELMKVEGLTRHNKYRMQRRQILPKEEDTGWTNTKDPTRRTCTYYPQRPIMAFPPYYINNYNYNYDLQKLTSPVYPIWGQTGAHRGGVHPWTPPPYHPHWPPLDAWHWRTSQEIHADAWGCPIMPPPHGAYSTYSRNISSYPDSRAVDNGFSMTHTSVDLQPDEEVIDMVVKEAMSKPWLPLPLGLKPPSTESVLTELSRQGISTVPSHITGSRPR 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1600268 1603293 - Bpe021038.1 Bpe07g00227 105996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00227 535 Gene3D - 18 141 - -
Bpe07g00227 535 SUPERFAMILY Homeodomain-like 288 337 IPR009057 -
Bpe07g00227 535 MobiDBLite consensus disorder prediction 177 202 - -
Bpe07g00227 535 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Bpe07g00227 535 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 289 332 IPR006447 GO:0003677
Bpe07g00227 535 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 533 - -
Bpe07g00227 535 Gene3D - 286 341 - -
Bpe07g00227 535 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Bpe07g00227 535 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 533 IPR044825 GO:0003700|GO:0045893
Bpe07g00227 535 SUPERFAMILY CheY-like 16 136 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00227 - - - pvy:116138341 573.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00227 Bpe-Chr7:1600268 Bpe14g00722 Bpe-Chr14:5610147 1.30E-21 dispersed
Bpe07g00227 Bpe-Chr7:1600268 Bpe07g00639 Bpe-Chr7:13122506 9.09E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21610 PF00072 Response_reg 2.00E-07 CL0304 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00227 Bpe_Chr07 FPKM 35.288288 36.412422 54.567993 55.71674 11.374161 9.495648 11.94782 40.794884 39.35075 39.205269