Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00230 AGCAAAAGCTCTCTAGCAAAACTTGCTCCACTCGAGGCAATTCTATTCGACGTAGATGGAACATTATGTGATTCCGATCCACTCCACTACTATGCTTTCCAGGAAATGCTTCAAGGGATTGGCTTCAATGGAGGAATTCCAATAGACGAAGAATTCTTCATTGAGAATGTTGCTGGCAGGCACAACACTGATATTGCAATGAGACTCTTCCCCGATGATTATGAGCGAGGATTAAAATTAGCTGACGAAAAGGAAGCCATTTTTAGAAAATTAGTCACGGAGCAAGTGAAGCCTTTGAGCGGTCTGTTGAAGTTGAAGAAATGGATCGAAGATCGTGGTTTGAAGCGGGCAGCAGTTACTAACGCTCCGAGAGTAAATGCTGAGCTGATGATCTCAATTCTCGGGCTTTCGGATTTCTTCGAAACCATTATTATAGGCGATGAATGTGAACATGTGAAGCCACATCCGGACCCCTACTTGAAGGCTCTCAAAGTACTCAATGTATCCAAAGATCACACTTTCATATTCGAGGACTCTGTATCTGGAATAAAAGCAGGAGTTGCGGCAGGGATGCCAGTAGTTGGTATATCAACTAGAAATCCTGAGCATTTGCTGATGGAGGCAAATCCGACCTTCCTTATAAAAGATTATGAGGATCCAAAGTTATGGTCTGCTTTAGAACAGCTTGATCAACAAAGGTAA 702 42.74 SKSSLAKLAPLEAILFDVDGTLCDSDPLHYYAFQEMLQGIGFNGGIPIDEEFFIENVAGRHNTDIAMRLFPDDYERGLKLADEKEAIFRKLVTEQVKPLSGLLKLKKWIEDRGLKRAAVTNAPRVNAELMISILGLSDFFETIIIGDECEHVKPHPDPYLKALKVLNVSKDHTFIFEDSVSGIKAGVAAGMPVVGISTRNPEHLLMEANPTFLIKDYEDPKLWSALEQLDQQR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1634038 1635348 + Bpe021041.1 Bpe07g00230 105999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00230 233 CDD HAD_BPGM-like 13 196 - -
Bpe07g00230 233 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 96 196 IPR006439 -
Bpe07g00230 233 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 232 - -
Bpe07g00230 233 Gene3D Putative phosphatase; domain 2 26 94 IPR023198 -
Bpe07g00230 233 Pfam Haloacid dehalogenase-like hydrolase 14 195 IPR041492 -
Bpe07g00230 233 SFLD Haloacid Dehalogenase 11 219 - -
Bpe07g00230 233 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 140 156 IPR006439 -
Bpe07g00230 233 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 11 22 IPR006439 -
Bpe07g00230 233 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 109 122 IPR006439 -
Bpe07g00230 233 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 11 219 - -
Bpe07g00230 233 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 232 - -
Bpe07g00230 233 Gene3D - 12 220 IPR023214 -
Bpe07g00230 233 SUPERFAMILY HAD-like 9 228 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00230 - - - bhj:120089975 392.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01841 Bpe-Chr2:20540183 Bpe07g00230 Bpe-Chr7:1634038 2.26E-17 dispersed
Bpe06g00081 Bpe-Chr6:1123598 Bpe07g00230 Bpe-Chr7:1634038 2.28E-14 dispersed
Bpe07g00230 Bpe-Chr7:1634038 Bpe11g01047 Bpe-Chr11:7808376 3.68E-14 dispersed
Bpe07g00230 Bpe-Chr7:1634038 Bpe07g00870 Bpe-Chr7:14785386 3.03E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g622 . Blo03g00108 . . . Bpe07g00230 . . Cmo06g00860 . . . . . Sed07g1320 . . Bhi11g00108 Tan01g2131 Cmetu06g0814 . . . . . . . . . . . . . . . Lsi07g01233 . . Cme06g02502 . . . . . . . Bma12g00230 . . . Cma06g00838 . . . . . . . . . . . . . . . . . . . . Csa03g00207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00230 Bpe_Chr07 FPKM 450.343933 463.85202 423.709503 393.075958 84.966026 87.058556 74.443031 190.05011 205.571747 194.083862