Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00239 GAAATGGAGAATAAGGAGGGTGAAAACTGGAGGAAATTGGTGATCAACATGCTCCCACCTGGTGCTTCTCTTCCTGAAAATACTAATCTAGATTACTCCATAGCTTTAGAATACAGAGGCCCACCAGTGTCCTATGATGTTCCTCGGGTCGAACCACTCGATGTGAATTCACGGGAAATTCCAGTCGCAGAACCTTTATCAGAATCACGCCAGTCAATAGCAAATACTAGACATCCAATAATTGAGCCTATTCCTTTACCAGTTTCTTATATTGCTGGTGTCACTAATTCAGCCACTCAAAGTCCGAGGGTATCGGCAAGTTCGGAATCTGTAGTGTCTGTCTTGCAAAACCCAGATTTTTCTTCCGCTTCTCCATCAGCTTCTCCGGTCTCCGTTCATAATCCTCTGAATAATCGGCCTAATCATGTGACTAATGAGGTCAGGAGGACTCCTGTGGTGACTTTCAACACAGTTGATCGGTCCCAGAGGAAAGATGGTAATTCAGAGACGCCTATATATGTAGATTCTATTGGAGTTTTGAAAGAGAAGAAGAAGAAGAAGAAGAGTAGAGTTTGTTACAGGTGTGGAAAAGGAAAATGGGAGACTAAAGAGTCGTGTCTTGTTTGTGATGCCAAGTATTGTAGCAATTGTGTACTGAAGGCAATGGGGGCGATGCCTCAAGGACGTAAGTGTGTTCCGTGCATAGGTGAGCCGATTGATGAATTGAAGAGATTAAAATTGGGTAAGAAATCAAGGGTTTTGTCCCGATTGCTCAGTCCTCTCGAAGTCAAACAGATTATGAAAGCAGAAAAAGAATGTTCTTCGAATCAACTCCGGCCTGAGCAGCTTTTCGTTAATGGATGTCCTCTAAAGCCTGAAGAGATGGCAGAGTTGCTTGGATGCCCACTACCTCCTCAGAAGTTGAAGCCTGGCAAATATTGGTACGACAAAGAATCTGGCCTCTGGGGAAAGGAAGGAGAAAAGCCGGATAAAATCATTAGTTCCAACTTAAATTTCACTGGCAAGCTTAGCCGCCATGCAAGCAATGGGAACACTGAAGTTTACATAAATGGTCGAGAAATTACGAAACTTGAATTGAGGTTGGCAAATGTGCAATGTCCTCGTGACACTCATTTTTGGGTCTATGATGATGGTCGATATGAGGAGGAAGGGCAGAATAATATCAGGGGCAACATTTGGGAGAAGGCATCAACACGGTTTGTTTGTGCTTTGTTCTCTTTGCCTGTGCCCCATGGTCAACCCCACGGAGCAAGAAATGAGGCTAGCACTTACACTACAGTTCCTAACTATTTGGTGCAGAAAAAGGTTCAGAAGCTCCTTCTTATTGGGATTCATGGTTCAGGAACAAGCACTATTTTTAAACAGGCAAAATTACTTTATGGGAATAGATTTAGTGCAGAAGAATTGCAAGATATTAAGCTGATGATTCAGAGCAACTTGTACAAATATTTGAGCATTGTGCTTGATGGACGTGAACGATTTGAGGAAGAGGTCGCATATAGGACAAAAGCAATAAAACTCCACGACCAAGTTTCTGTGGCTGTATGGTGGCTTTGTTGGTTAATTGTCAAATGCAATCTTGTTTTAGGTAACGAATCTAATGATTGCGTCTACTCAATCAACCCACGACTGAAACACTTCTCTGACTGGCTTCTGGACATCATAGCAACGGGAGATTTGGATGCATTTTTTCCTGCCGCAACTCGTGAATATGCTCCATTAGTAGAAGAGTTGTGGAAGGATCCTGCTATCCAGGAAACATACAAAAGAAAAGATGAACTTCACTTTCTTCCAGATGTCTCCGAGTACTTCTTAAGCCGGGCTGTGGAGGTGTCTAGCAATGAATATGAACCTTCAGAAAGAGACATTATATATGCAGAAGGCGTGACTCAAGGAAATGGCTTAGCTTTCATGGAATTCTCGCTCGACGATCGCAGTCCGATGTCGGAAACCTACACTGATAATTTAGAGGCTCCACCCCCGCCGCTGACCAAATACCAGCTTGTAAGGGTAAATGCGAAGGGGATGAACGACGGGTGTAAATGGTTGGAAATGTTCGAAGATGTGCGGGTTATCGTCTTCTGCGTCGCACTCAGTGATTTCGACCAAATGTGGATTTCGCCAGACGGGAGTGGGAGTGGAAACATACTTCAAAACAAGATGATGCAGAGCAAAGAGCTGTTCGAGACGATGATCCGACAACCATGTTTCAAGGAAACGCCATTTGTCTTGATCCTAAACAAATACGACATCTTCGAGGAGAAGATAAACAGGATCGCATTGAGTTCGTGTGAATGGTTCAACGATTTTCGGCCGCTTCTGCCTCACAACAGCAACCAATCGTTAGCTCATCAAGCATATTATTATGTGGCTATGAAGTTTAAGGATTTGTACTTGTCATTGACGGGTCGGAAGTTGTTCGTTTGGCAGGCGAAAGCCCGAGATAGGGTGACGGTGGACGAGGCATTTAAGTATATCAGAGAGGTGGTGAAGTGGGACGAAGAGAGAGAGGAGAACTACTATAATGGACCTGAAGATTCATTTTACAGTACAGATATCAGCTCCTCCCCATTTGTAAGTTGA 2604 43.66 EMENKEGENWRKLVINMLPPGASLPENTNLDYSIALEYRGPPVSYDVPRVEPLDVNSREIPVAEPLSESRQSIANTRHPIIEPIPLPVSYIAGVTNSATQSPRVSASSESVVSVLQNPDFSSASPSASPVSVHNPLNNRPNHVTNEVRRTPVVTFNTVDRSQRKDGNSETPIYVDSIGVLKEKKKKKKSRVCYRCGKGKWETKESCLVCDAKYCSNCVLKAMGAMPQGRKCVPCIGEPIDELKRLKLGKKSRVLSRLLSPLEVKQIMKAEKECSSNQLRPEQLFVNGCPLKPEEMAELLGCPLPPQKLKPGKYWYDKESGLWGKEGEKPDKIISSNLNFTGKLSRHASNGNTEVYINGREITKLELRLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQPHGARNEASTYTTVPNYLVQKKVQKLLLIGIHGSGTSTIFKQAKLLYGNRFSAEELQDIKLMIQSNLYKYLSIVLDGRERFEEEVAYRTKAIKLHDQVSVAVWWLCWLIVKCNLVLGNESNDCVYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKDELHFLPDVSEYFLSRAVEVSSNEYEPSERDIIYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTKYQLVRVNAKGMNDGCKWLEMFEDVRVIVFCVALSDFDQMWISPDGSGSGNILQNKMMQSKELFETMIRQPCFKETPFVLILNKYDIFEEKINRIALSSCEWFNDFRPLLPHNSNQSLAHQAYYYVAMKFKDLYLSLTGRKLFVWQAKARDRVTVDEAFKYIREVVKWDEEREENYYNGPEDSFYSTDISSSPFVS 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1694809 1700052 + Bpe021050.1 Bpe07g00239 106008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00239 867 CDD G-alpha 444 840 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 19 864 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 SUPERFAMILY Transducin (alpha subunit), insertion domain 471 633 IPR011025 GO:0007165
Bpe07g00239 867 Gene3D - 473 634 IPR011025 GO:0007165
Bpe07g00239 867 MobiDBLite consensus disorder prediction 124 143 - -
Bpe07g00239 867 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 19 864 - -
Bpe07g00239 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 839 IPR027417 -
Bpe07g00239 867 ProSiteProfiles G-alpha domain profile. 442 848 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 Gene3D - 652 846 IPR027417 -
Bpe07g00239 867 SUPERFAMILY FYVE/PHD zinc finger 183 235 IPR011011 -
Bpe07g00239 867 Pfam G-protein alpha subunit 441 837 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 SMART galpha_1 440 847 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 PRINTS Alpha G protein (transducin) signature 749 758 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 PRINTS Alpha G protein (transducin) signature 445 460 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 PRINTS Alpha G protein (transducin) signature 696 724 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g00239 867 PRINTS Alpha G protein (transducin) signature 623 645 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00239 - - - zju:107430957 1406.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00514 Bpe-Chr2:3363431 Bpe07g00239 Bpe-Chr7:1694809 3.89E-47 dispersed
Bpe07g00239 Bpe-Chr7:1694809 Bpe07g01085 Bpe-Chr7:16203304 0 dispersed
Bpe07g00239 Bpe-Chr7:1694809 Bpe07g00403 Bpe-Chr7:3848109 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00239 Bpe_Chr07 FPKM 2.706037 1.140444 0.0 0.0 10.055367 6.518448 7.658958 0.0 0.0 0.0