Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00246 ATGGCGAATGAAATATGGGTTCTTCCGTTTTTTGGGCAAGGGCATCTTCTCCCTCTGATGGAGTTGTGCAAACACCTGGCTCAGAGGAATTTCAAAGCTACTTTTGCTATCCCCTCTCATCTCTCCTCCGCCATTCCTTCCTCTTTCCGTCAATACCCTAATGTCCACATCGCTGAGATTTCATCCGCCCCGGAGACTCGGCCGGAGCCTGGAGCGGAACAGATTCATCAACCCCCTCACCACCACGATCTGGATGCTGGTCTTGAGAATCTTCTGTCGCAACTCGACTGCGGTCGGCCGATTTGTGCCATTGTCGACGTTATGATCAGTTCGACTGGCGAAGTATTCAGAAAGTTTGATATTCCTACGGTGACGTTTTTTACATCCGGAGCTTGCTCCGCTGCAATGGAAGACTCCATTTCAAAGGTACAACCGGAGGATCTTAAACCTGGTGAAGTACGTTTGCTCCCTGGTTTACCGGAAGAAATGGCCGTCTCTTATTCCGATTTTAAAATGCAATCCCGCGGCCCTCCGCCCCCTCACGGTGCAGGCGGACCTCCGGGAAGGGGAGACGGTTTTCCTCCGCCTCTTCACGGACCCGTCGGACCTTCCGAACGTGATGGAGCTGGTTTTCCTACACCCCCTCATGGATTGCACGGGCCACCGGGTGGAGGAGCTGGTTTTCAACCACCGCCGGGTCGTATGCCGCCGCGAGCAGGCGACAAGCCACCGTGGTTTGACGATAGTGAGAAGTCCATCGCATTGATGTTCAACACGTGTGACGATCTGGAGCGTCCGTTTATCGAGTACGTCGGTAAGGTGGTCGGAAAACCAGTCTGGGGAGTTGGCCCACTTCTGCCGGAGAAATACTGGAAATCAGTGGGTTCGGTCGTTCGTGATAGAGAAATCCGATCAGATCGCCAGTCAAACTTCACCGAGGACCAAGTGCTGGAGTGGCTCGATTCGAAGCCACGTGGCTCCGTCTTATACGTTGCGTTCGGCACGGAAGTGGGCCCTACAGCAGAGGAGTATAAAGAATTAGAAAGTGCATTGGAAGAATCGACCCGACCATTCATATGGGTCATCCCACCCGGTGCAGGAAGACAAGGTCCACCAAGCGGCCCACCACCTGGTGCAAGAACCCAAGGCCAACCGAGCGGCCCACCACCTGATGCAGGAAGACAAGGCCCACCTACCGACCCACCACATAATGCAGGAAGACAAGGCCCACCGAACGGCCCACTGAGTGGCCCACCACCCGGATTGAATGGGCCCAATCATAGATCCGATTCGGATGAGGGCTATTTTCCTGAAGGGTTGGATCGTAAAATTGGTGACAGGGGTATGATCATACGCGGATGGGCTCCACAATTGCTTATCCTGAGCCATCCATCGACGGGTGGATTTCTATCACATTGCGGGTGGAATTCAACCGTCGAGGCAATCGGACGAGGGGTCCCGATCCTTGCTTGGCCAATCAGAGGCGACCAGTACCACGACGCCACGTTGGTTGCAGCCCACTTAAAAGTGGGGTGTCCGATTAACGACAACGCTTCCGAAGCTATTAAGAAGGATACAATTGGAAAAGGAATAGAGAATTTAATGTGCGACGAAGAAATTAAAAAACGAGCCGTAGCACTGAGCGAGAAATTCGAACAGGGGTTTCCTTCCTCTTCCATGGCTGCTTTGGATGACTTCAAGGAATTTATCACACGGAGAAAATGTTGA 1728 53.07 MANEIWVLPFFGQGHLLPLMELCKHLAQRNFKATFAIPSHLSSAIPSSFRQYPNVHIAEISSAPETRPEPGAEQIHQPPHHHDLDAGLENLLSQLDCGRPICAIVDVMISSTGEVFRKFDIPTVTFFTSGACSAAMEDSISKVQPEDLKPGEVRLLPGLPEEMAVSYSDFKMQSRGPPPPHGAGGPPGRGDGFPPPLHGPVGPSERDGAGFPTPPHGLHGPPGGGAGFQPPPGRMPPRAGDKPPWFDDSEKSIALMFNTCDDLERPFIEYVGKVVGKPVWGVGPLLPEKYWKSVGSVVRDREIRSDRQSNFTEDQVLEWLDSKPRGSVLYVAFGTEVGPTAEEYKELESALEESTRPFIWVIPPGAGRQGPPSGPPPGARTQGQPSGPPPDAGRQGPPTDPPHNAGRQGPPNGPLSGPPPGLNGPNHRSDSDEGYFPEGLDRKIGDRGMIIRGWAPQLLILSHPSTGGFLSHCGWNSTVEAIGRGVPILAWPIRGDQYHDATLVAAHLKVGCPINDNASEAIKKDTIGKGIENLMCDEEIKKRAVALSEKFEQGFPSSSMAALDDFKEFITRRKC 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1748080 1749807 - Bpe021057.1 Bpe07g00246 106015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00246 575 PANTHER GLYCOSYLTRANSFERASE 3 572 - -
Bpe07g00246 575 CDD GT1_Gtf-like 7 570 IPR002213 GO:0008194
Bpe07g00246 575 MobiDBLite consensus disorder prediction 63 83 - -
Bpe07g00246 575 MobiDBLite consensus disorder prediction 170 244 - -
Bpe07g00246 575 MobiDBLite consensus disorder prediction 215 239 - -
Bpe07g00246 575 PANTHER EG:EG0003.4 PROTEIN-RELATED 3 572 - -
Bpe07g00246 575 Gene3D Glycogen Phosphorylase B; 2 181 - -
Bpe07g00246 575 Gene3D Glycogen Phosphorylase B; 246 301 - -
Bpe07g00246 575 MobiDBLite consensus disorder prediction 368 421 - -
Bpe07g00246 575 MobiDBLite consensus disorder prediction 361 440 - -
Bpe07g00246 575 MobiDBLite consensus disorder prediction 179 201 - -
Bpe07g00246 575 ProSitePatterns UDP-glycosyltransferases signature. 454 497 IPR035595 -
Bpe07g00246 575 Gene3D Glycogen Phosphorylase B; 302 367 - -
Bpe07g00246 575 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 448 549 IPR002213 GO:0008194
Bpe07g00246 575 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 572 - -
Bpe07g00246 575 Gene3D Glycogen Phosphorylase B; 429 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00246 - - - jre:108980936 595.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00246 Bpe-Chr7:1748080 Bpe13g00726 Bpe-Chr13:13821057 8.97E-36 dispersed
Bpe07g00246 Bpe-Chr7:1748080 Bpe14g00953 Bpe-Chr14:7073220 3.40E-32 transposed
Bpe07g00246 Bpe-Chr7:1748080 Bpe13g00978 Bpe-Chr13:15573080 1.66E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g813 . . . . . Bpe07g00246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017265 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00246 Bpe_Chr07 FPKM 7.449932 7.152419 9.108842 7.862113 18.926804 19.422873 16.434431 6.199556 7.059966 7.427053