Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00251 ATGGCTGCTCCGGCATCTGCTATCAAATTGACGGAGGGAGCAGTGATGGTAGTATGCAAGAGGGAGGTCACGGCTGAGGAATATCAGCCGGTGGTTCAAGTGGTCGACTTGAAGCTGGTGAATACTCAGGCGCATCAGACCAGCAGCGAGAGGTACAGATTGTTGCTCTCTGATGGGACGCATTACCAGCAAGGGATGCTGGGAACTCAGCTAAATGAACTGGTCAAGACGGGGAGGTTACAGAAAGGTTCAATTGTTCAATTGAGGCAGTATGTCTGCAATCCAGTTCAAGATCGCCTAATTATAATTGTCATTGAGATGGATTTGATAATGGAAAAGTGTGATATCCTTGGCGAACCAGTAGCAGCACCAAGATTGGTGAGTGGAACAGTGAGTGCAAACCCCCAATCATCTTCTATCATTCTGGGTGGTGGCCAGGTTAATAAACGAATTGTTTCAGGGACATCTCTTGAACATCAGAAGATGAATCAACCTCATGGTGGTTTTTATTCTAACAATTCTGGTTCAGAGAGTTTTGCTGCTTCAAATGTGCCAACTCCAAACTCTAGATTTAATGCTCCAGCTCCTTTAAGCGGGTCTTATGGTGATCAGAAGATGGGTTTTAACAATAACAAGTCAGTTGCTTCACGGCTACCTCCCAATACTTATGCCCCAGGATATCAAAATTCACCTCCCATGTATATGAACAGAGGCCCCATTGCTAAAAATGAAGCACCCCCTAGGATTATACCTATAAGTGCTCTGAATCCTTACCAGGGTAGGTGGACGATCAAGGCTAGAGTAACGGCAAAAGGAGAACTTAGGCACTATAATAATCCTCGAGGTGATGGAAAAGTATTCTCTTTCGATCTTCTCGATTCTGATGGTGGAGAAATTCGGGCAACTTGCTTTAATGCAGTGGCTGATCAGTTTCACAGCCAGATTGAACCAGGCAAAGTATACTTTATTTCTAAGGGTACTTTAAAACCTGCTCAAAAGAATTTCAACCACCTCTCCAATGACCTAGAAATATTTCTGGAGAGCTCATCTACAATACAACCATGCCTTGAGGAGGACAACTCTATTCCTCGACAGCAATTTCATTTCCGTCCCATTAGTGATGTTGAAGGCTTGGATAACAACATAATAGTTGATGTTATTGGGGTAGTTTCCTCCATAAATCCTGCAACTTCCATAATGAGGAAAAATGGGTCTGAAACTCAAAAGAGGACTCTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAATTGACTCTGTGGGGTGCTCTTTGCTCGACAGATGGACAAAGGCTGCAAAACCTGTGTGATTCTGGGGTATTTCCAGTTCTGGCTGTGAAATCTGCTAGAGTTAGTGACTTTAATGGGAAGGCGGTGGGTACTATTTCTACAAGTCAGCTTTTTGTCGAGCCAGAATTTCCTGAGGCACATAGACTGAGAGATTGGTTTGAAAAGGAAGGGAGGAACACTCCTTCTGTGTCTATATCCAGGGAAATGTCTGGTTTGGGTAGGACAGATGCACGCAAAACTATTTCACATATTAAAGATGAGAAGTTGGGGACTTCTGAAAAGCCAGATTGGATCACTTTCAGTGCAACTGTTTCATTCATAAAGGTTGATAACTTCTGCTACACAGCATGCCCAGTCATGATTGGGGACAGGCAGTGCAACAAAAAGGTTATCAATAATGGTGATGGGAAATGGAGGTGCGAGAGGTGTGATCAGTTGCTTGCAGAATGCGACTACAGGTACATACTGCAGCTTCAAATACAGGACCATACTGGCTTAACATGGGTGACCGCATTTCAAGAAACTGGGGAGGAGATCATGGGCATATCTGCAAAGAATTTGTATTATTTGAAGTATGAAGAGCAGGATGATGAGAAATTTGCAGAAATCATTCGTAAGGTTCTATTCACTAGTTTCATTTTTAAGTTGAAAGTGAAAGAAGAGACATATAGTGATGAACAACGGATAAAGTCCACCGTAGTGAAGGCAGACAAGGTAAACTTTTCATCAGAGTCTAGATATCTATTGGATATGTTGAACAAACTTAGATCAGAGAGCTCAGATTCTTTTGCCACTAAGACAGAAAATAATACCAATAACCCATCTGGAGTTGGGAGCTTCGGCAATTCACAGCATATCATGGCACCTCAGGTTGGAACCTTCGGAGGTAGTGGTTATGGCATTCGGGATGTTGGGGCTAGAGCCAACCAATCTGACCAGTATGGGCACCAGTATAATATTTCTAGGGTTCATCCACCTAATTTGCACGTGTATTGCAACAGTTGTGGTGGCACAGGTCACAACTCCATGAACTGTCCAAGTATAATGAATAGTCCAGCAATGGCTCAGTCATCCGGAGGGATGTATCCAAATAGAGCTTCCGGGGGAGTTTCTGGTGGCAATACTGGTGAATGTTTTAAGTGCCACCAGACTGGGCACTGGGCAAGAGATTGCCCTGGCCTGTCTTCTATTCCCCCAGCTTATGGTAGTGGTGGTGGCTATGCAGCGGTATGA 2541 43.84 MAAPASAIKLTEGAVMVVCKREVTAEEYQPVVQVVDLKLVNTQAHQTSSERYRLLLSDGTHYQQGMLGTQLNELVKTGRLQKGSIVQLRQYVCNPVQDRLIIIVIEMDLIMEKCDILGEPVAAPRLVSGTVSANPQSSSIILGGGQVNKRIVSGTSLEHQKMNQPHGGFYSNNSGSESFAASNVPTPNSRFNAPAPLSGSYGDQKMGFNNNKSVASRLPPNTYAPGYQNSPPMYMNRGPIAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRATCFNAVADQFHSQIEPGKVYFISKGTLKPAQKNFNHLSNDLEIFLESSSTIQPCLEEDNSIPRQQFHFRPISDVEGLDNNIIVDVIGVVSSINPATSIMRKNGSETQKRTLQLKDMSGRSVELTLWGALCSTDGQRLQNLCDSGVFPVLAVKSARVSDFNGKAVGTISTSQLFVEPEFPEAHRLRDWFEKEGRNTPSVSISREMSGLGRTDARKTISHIKDEKLGTSEKPDWITFSATVSFIKVDNFCYTACPVMIGDRQCNKKVINNGDGKWRCERCDQLLAECDYRYILQLQIQDHTGLTWVTAFQETGEEIMGISAKNLYYLKYEEQDDEKFAEIIRKVLFTSFIFKLKVKEETYSDEQRIKSTVVKADKVNFSSESRYLLDMLNKLRSESSDSFATKTENNTNNPSGVGSFGNSQHIMAPQVGTFGGSGYGIRDVGARANQSDQYGHQYNISRVHPPNLHVYCNSCGGTGHNSMNCPSIMNSPAMAQSSGGMYPNRASGGVSGGNTGECFKCHQTGHWARDCPGLSSIPPAYGSGGGYAAV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1791913 1795226 - Bpe021062.1 Bpe07g00251 106020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00251 846 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bpe07g00251 846 CDD RPA1_DBD_B 383 490 - -
Bpe07g00251 846 Pfam OB-fold nucleic acid binding domain 262 345 IPR004365 GO:0003676
Bpe07g00251 846 Pfam Replication protein A OB domain 372 475 IPR031657 -
Bpe07g00251 846 CDD RPA1_DBD_A 251 354 - -
Bpe07g00251 846 Gene3D - 8 123 IPR012340 -
Bpe07g00251 846 PANTHER REPLICATION PROTEIN A SUBUNIT 7 726 - -
Bpe07g00251 846 SUPERFAMILY Retrovirus zinc finger-like domains 801 832 IPR036875 GO:0003676|GO:0008270
Bpe07g00251 846 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 218 690 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 248 361 IPR012340 -
Bpe07g00251 846 ProSiteProfiles Zinc finger CCHC-type profile. 768 783 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 Pfam Replication factor-A C terminal domain 533 684 IPR013955 -
Bpe07g00251 846 CDD RPA1_DBD_C 517 690 IPR013955 -
Bpe07g00251 846 Gene3D - 360 499 IPR012340 -
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Bpe07g00251 846 Gene3D - 765 832 - -
Bpe07g00251 846 Pfam Zinc knuckle 813 828 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 514 691 IPR012340 -
Bpe07g00251 846 SMART c2hcfinal6 813 829 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 SMART c2hcfinal6 767 783 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 Gene3D - 248 357 IPR012340 -
Bpe07g00251 846 MobiDBLite consensus disorder prediction 203 229 - -
Bpe07g00251 846 ProSiteProfiles Zinc finger CCHC-type profile. 814 828 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 MobiDBLite consensus disorder prediction 165 195 - -
Bpe07g00251 846 MobiDBLite consensus disorder prediction 165 230 - -
Bpe07g00251 846 Gene3D - 500 691 IPR012340 -
Bpe07g00251 846 PANTHER REPLICATION FACTOR A 1, RFA1 7 726 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 367 496 IPR012340 -
Bpe07g00251 846 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00251 K07466 RFA1, RPA1, rpa; replication factor A1 - csv:101211358 1164.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00251 Bpe-Chr7:1791913 Bpe13g01237 Bpe-Chr13:17632853 0 dispersed
Bpe07g00251 Bpe-Chr7:1791913 Bpe12g00524 Bpe-Chr12:11107744 1.03E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g886 . . . . . Bpe07g00251 . . Cmo06g00609 Cmo16g01260 . . . . . Cpe14g01003 . . . . . . . . Cla10g00108 Cam10g0103 Cec10g0110 Cco10g0112 Clacu10g0107 Cmu10g0955 Cre10g0366 . . . . Lsi07g01137 . . Cme06g02413 . . . . . . . Bma12g00253 . . . Cma06g00602 Cma16g01216 Car06g00537 Car16g01142 . . . . . . . . . . . . . . . . . Csa03g00107 Chy06g02198 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00251 Bpe_Chr07 FPKM 5.927027 7.338508 5.114987 4.903951 14.045284 12.23941 11.574044 5.560954 4.762202 5.944424