Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00251 ATGGCTGCTCCGGCATCTGCTATCAAATTGACGGAGGGAGCAGTGATGGTAGTATGCAAGAGGGAGGTCACGGCTGAGGAATATCAGCCGGTGGTTCAAGTGGTCGACTTGAAGCTGGTGAATACTCAGGCGCATCAGACCAGCAGCGAGAGGTACAGATTGTTGCTCTCTGATGGGACGCATTACCAGCAAGGGATGCTGGGAACTCAGCTAAATGAACTGGTCAAGACGGGGAGGTTACAGAAAGGTTCAATTGTTCAATTGAGGCAGTATGTCTGCAATCCAGTTCAAGATCGCCTAATTATAATTGTCATTGAGATGGATTTGATAATGGAAAAGTGTGATATCCTTGGCGAACCAGTAGCAGCACCAAGATTGGTGAGTGGAACAGTGAGTGCAAACCCCCAATCATCTTCTATCATTCTGGGTGGTGGCCAGGTTAATAAACGAATTGTTTCAGGGACATCTCTTGAACATCAGAAGATGAATCAACCTCATGGTGGTTTTTATTCTAACAATTCTGGTTCAGAGAGTTTTGCTGCTTCAAATGTGCCAACTCCAAACTCTAGATTTAATGCTCCAGCTCCTTTAAGCGGGTCTTATGGTGATCAGAAGATGGGTTTTAACAATAACAAGTCAGTTGCTTCACGGCTACCTCCCAATACTTATGCCCCAGGATATCAAAATTCACCTCCCATGTATATGAACAGAGGCCCCATTGCTAAAAATGAAGCACCCCCTAGGATTATACCTATAAGTGCTCTGAATCCTTACCAGGGTAGGTGGACGATCAAGGCTAGAGTAACGGCAAAAGGAGAACTTAGGCACTATAATAATCCTCGAGGTGATGGAAAAGTATTCTCTTTCGATCTTCTCGATTCTGATGGTGGAGAAATTCGGGCAACTTGCTTTAATGCAGTGGCTGATCAGTTTCACAGCCAGATTGAACCAGGCAAAGTATACTTTATTTCTAAGGGTACTTTAAAACCTGCTCAAAAGAATTTCAACCACCTCTCCAATGACCTAGAAATATTTCTGGAGAGCTCATCTACAATACAACCATGCCTTGAGGAGGACAACTCTATTCCTCGACAGCAATTTCATTTCCGTCCCATTAGTGATGTTGAAGGCTTGGATAACAACATAATAGTTGATGTTATTGGGGTAGTTTCCTCCATAAATCCTGCAACTTCCATAATGAGGAAAAATGGGTCTGAAACTCAAAAGAGGACTCTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAATTGACTCTGTGGGGTGCTCTTTGCTCGACAGATGGACAAAGGCTGCAAAACCTGTGTGATTCTGGGGTATTTCCAGTTCTGGCTGTGAAATCTGCTAGAGTTAGTGACTTTAATGGGAAGGCGGTGGGTACTATTTCTACAAGTCAGCTTTTTGTCGAGCCAGAATTTCCTGAGGCACATAGACTGAGAGATTGGTTTGAAAAGGAAGGGAGGAACACTCCTTCTGTGTCTATATCCAGGGAAATGTCTGGTTTGGGTAGGACAGATGCACGCAAAACTATTTCACATATTAAAGATGAGAAGTTGGGGACTTCTGAAAAGCCAGATTGGATCACTTTCAGTGCAACTGTTTCATTCATAAAGGTTGATAACTTCTGCTACACAGCATGCCCAGTCATGATTGGGGACAGGCAGTGCAACAAAAAGGTTATCAATAATGGTGATGGGAAATGGAGGTGCGAGAGGTGTGATCAGTTGCTTGCAGAATGCGACTACAGGTACATACTGCAGCTTCAAATACAGGACCATACTGGCTTAACATGGGTGACCGCATTTCAAGAAACTGGGGAGGAGATCATGGGCATATCTGCAAAGAATTTGTATTATTTGAAGTATGAAGAGCAGGATGATGAGAAATTTGCAGAAATCATTCGTAAGGTTCTATTCACTAGTTTCATTTTTAAGTTGAAAGTGAAAGAAGAGACATATAGTGATGAACAACGGATAAAGTCCACCGTAGTGAAGGCAGACAAGGTAAACTTTTCATCAGAGTCTAGATATCTATTGGATATGTTGAACAAACTTAGATCAGAGAGCTCAGATTCTTTTGCCACTAAGACAGAAAATAATACCAATAACCCATCTGGAGTTGGGAGCTTCGGCAATTCACAGCATATCATGGCACCTCAGGTTGGAACCTTCGGAGGTAGTGGTTATGGCATTCGGGATGTTGGGGCTAGAGCCAACCAATCTGACCAGTATGGGCACCAGTATAATATTTCTAGGGTTCATCCACCTAATTTGCACGTGTATTGCAACAGTTGTGGTGGCACAGGTCACAACTCCATGAACTGTCCAAGTATAATGAATAGTCCAGCAATGGCTCAGTCATCCGGAGGGATGTATCCAAATAGAGCTTCCGGGGGAGTTTCTGGTGGCAATACTGGTGAATGTTTTAAGTGCCACCAGACTGGGCACTGGGCAAGAGATTGCCCTGGCCTGTCTTCTATTCCCCCAGCTTATGGTAGTGGTGGTGGCTATGCAGCGGTATGA 2541 43.84 MAAPASAIKLTEGAVMVVCKREVTAEEYQPVVQVVDLKLVNTQAHQTSSERYRLLLSDGTHYQQGMLGTQLNELVKTGRLQKGSIVQLRQYVCNPVQDRLIIIVIEMDLIMEKCDILGEPVAAPRLVSGTVSANPQSSSIILGGGQVNKRIVSGTSLEHQKMNQPHGGFYSNNSGSESFAASNVPTPNSRFNAPAPLSGSYGDQKMGFNNNKSVASRLPPNTYAPGYQNSPPMYMNRGPIAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRATCFNAVADQFHSQIEPGKVYFISKGTLKPAQKNFNHLSNDLEIFLESSSTIQPCLEEDNSIPRQQFHFRPISDVEGLDNNIIVDVIGVVSSINPATSIMRKNGSETQKRTLQLKDMSGRSVELTLWGALCSTDGQRLQNLCDSGVFPVLAVKSARVSDFNGKAVGTISTSQLFVEPEFPEAHRLRDWFEKEGRNTPSVSISREMSGLGRTDARKTISHIKDEKLGTSEKPDWITFSATVSFIKVDNFCYTACPVMIGDRQCNKKVINNGDGKWRCERCDQLLAECDYRYILQLQIQDHTGLTWVTAFQETGEEIMGISAKNLYYLKYEEQDDEKFAEIIRKVLFTSFIFKLKVKEETYSDEQRIKSTVVKADKVNFSSESRYLLDMLNKLRSESSDSFATKTENNTNNPSGVGSFGNSQHIMAPQVGTFGGSGYGIRDVGARANQSDQYGHQYNISRVHPPNLHVYCNSCGGTGHNSMNCPSIMNSPAMAQSSGGMYPNRASGGVSGGNTGECFKCHQTGHWARDCPGLSSIPPAYGSGGGYAAV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1791913 1795226 - Bpe021062.1 Bpe07g00251 106020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00251 846 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bpe07g00251 846 CDD RPA1_DBD_B 383 490 - -
Bpe07g00251 846 Pfam OB-fold nucleic acid binding domain 262 345 IPR004365 GO:0003676
Bpe07g00251 846 Pfam Replication protein A OB domain 372 475 IPR031657 -
Bpe07g00251 846 CDD RPA1_DBD_A 251 354 - -
Bpe07g00251 846 Gene3D - 8 123 IPR012340 -
Bpe07g00251 846 PANTHER REPLICATION PROTEIN A SUBUNIT 7 726 - -
Bpe07g00251 846 SUPERFAMILY Retrovirus zinc finger-like domains 801 832 IPR036875 GO:0003676|GO:0008270
Bpe07g00251 846 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 218 690 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 248 361 IPR012340 -
Bpe07g00251 846 ProSiteProfiles Zinc finger CCHC-type profile. 768 783 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 Pfam Replication factor-A C terminal domain 533 684 IPR013955 -
Bpe07g00251 846 CDD RPA1_DBD_C 517 690 IPR013955 -
Bpe07g00251 846 Gene3D - 360 499 IPR012340 -
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Bpe07g00251 846 Gene3D - 765 832 - -
Bpe07g00251 846 Pfam Zinc knuckle 813 828 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 514 691 IPR012340 -
Bpe07g00251 846 SMART c2hcfinal6 813 829 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 SMART c2hcfinal6 767 783 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 Gene3D - 248 357 IPR012340 -
Bpe07g00251 846 MobiDBLite consensus disorder prediction 203 229 - -
Bpe07g00251 846 ProSiteProfiles Zinc finger CCHC-type profile. 814 828 IPR001878 GO:0003676|GO:0008270
Bpe07g00251 846 MobiDBLite consensus disorder prediction 165 195 - -
Bpe07g00251 846 MobiDBLite consensus disorder prediction 165 230 - -
Bpe07g00251 846 Gene3D - 500 691 IPR012340 -
Bpe07g00251 846 PANTHER REPLICATION FACTOR A 1, RFA1 7 726 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe07g00251 846 SUPERFAMILY Nucleic acid-binding proteins 367 496 IPR012340 -
Bpe07g00251 846 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00251 Bpe-Chr7:1791913 Bpe13g01237 Bpe-Chr13:17632853 0 dispersed
Bpe07g00251 Bpe-Chr7:1791913 Bpe12g00524 Bpe-Chr12:11107744 1.03E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00251 K07466 - csv:101211358 1164.06