Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00255 ATGATCGAAACCGTTAAGTATCTGATCGGCTCAGTCGGAGCTAGTGGCTATGGAAGCAAATCTACCGCCGAGGAGGTTACGGAAAGGTCTCCTAATCTCCGCTCTGTCACCGCTATAATCACAGGAGCGACGTCCGGAATAGGAGCGGAGACGGCGAGGGTTTTAGCGAAGAGGGGCGCCAGGCTGGTGCTTCCCGCTCGGAGCATTAAAGCTGCGGAGGAAACGAGAGCGCGTATTCTCTCTGAGTTTCCTGATTCTGATATCATCGTCATGGCTCTCGATCTCAGCTCTCTCTCCTCCGTTCGATCCTTCGTCTCCGAGTTCGAGCGCCTTCATCTACCTCTCAACCTTCTAATAAACAACGCCGGCAAATTTTCGCATGAACATGCACTTTCCGAAGATGGAGTGGAGATGACCTTTGCCACTAATTACCTCGGTCATTTTCTGTTAACGAAGCTTCTTCTGAAGAAGATATTGGAGACGGCCACTTTTTCCGGCATTCAAGGCCGGATAGTGAACGTATCGTCGAGCATTCATAGCTGGTTTTCCGGCGATGCAATAAAATATATCGGACAGATAAGCCAAAACATATGCCATTACGATGCCACACGTGCTTATGCTCTCTCCAAGCTCGCAAATATTTTGCATACCAAGGAGCTCGCACGGAGACTCAAGCAGGAAATGGAAGCGAATGTGACGGTGAACTGTGTTCATCCAGGAATAGTGCGTACCAGACTCACCAGAGATCGGGAAGGATTTCTCACGGATATCGCGTTTTTCATGGCCTCCAAGCTCTTGAAGACGATTACTCAGGCAGCAGCAACGACATGCTACGTGGCGACGAGTCAGAGGCTAACAAATGTTAGTGGGAAATACTTTGCCGATTGCAACGAAGCATTACCTTCGAAAATGGGATCAAACTTGGAAGAAGCCTCTCGTTTATGGTCAGCTTCTGAAGCCATTCTCTCCTCCACGTACCGCTCTAAACCTCTTTTTCAACCAGTCAATTTTAAATACTAG 1020 48.63 MIETVKYLIGSVGASGYGSKSTAEEVTERSPNLRSVTAIITGATSGIGAETARVLAKRGARLVLPARSIKAAEETRARILSEFPDSDIIVMALDLSSLSSVRSFVSEFERLHLPLNLLINNAGKFSHEHALSEDGVEMTFATNYLGHFLLTKLLLKKILETATFSGIQGRIVNVSSSIHSWFSGDAIKYIGQISQNICHYDATRAYALSKLANILHTKELARRLKQEMEANVTVNCVHPGIVRTRLTRDREGFLTDIAFFMASKLLKTITQAAATTCYVATSQRLTNVSGKYFADCNEALPSKMGSNLEEASRLWSASEAILSSTYRSKPLFQPVNFKY 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1836778 1838366 - Bpe021067.1 Bpe07g00255 106024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00255 339 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Bpe07g00255 339 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Bpe07g00255 339 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Bpe07g00255 339 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Bpe07g00255 339 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Bpe07g00255 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Bpe07g00255 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Bpe07g00255 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Bpe07g00255 339 CDD retinol-DH_like_SDR_c_like 37 315 - -
Bpe07g00255 339 Pfam short chain dehydrogenase 37 177 IPR002347 -
Bpe07g00255 339 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Bpe07g00255 339 Gene3D - 23 328 - -
Bpe07g00255 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 300 IPR036291 -
Bpe07g00255 339 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00255 - - - zju:107429796 492.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00662 Bpe-Chr5:20351107 Bpe07g00255 Bpe-Chr7:1836778 7.81E-78 dispersed
Bpe07g00255 Bpe-Chr7:1836778 Bpe13g00248 Bpe-Chr13:10435638 8.21E-111 dispersed
Bpe05g00500 Bpe-Chr5:19198655 Bpe07g00255 Bpe-Chr7:1836778 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00255 Bpe_Chr07 FPKM 192.411041 218.837402 17.518002 15.288926 27.606485 25.395302 24.159088 59.643539 58.95586 57.543617