Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00257 ATGGCGGTTCTCAGCCTTCAAGTCGTCCATTACAAGCCTCAGAAGCTCTACTCGTACAGTCGAGGCAGCAGATATACTTCCGTGAAGACGATACGGTGTGGAATTTCAGAGGCGTCCGGAGTTCCAGCTCCGATGGGGCAGAAGACCAAGTACAATGACGGTATTTTCGAGAGGGTTTTTATGACGCTGTTTGCTAAGAAAATGGGGAAATTTGGAAAGTCGGAGATGAAGAAGGAATGGTGGAATTTGTACGAGTACGAGAGTTTCGTTGATGTTTCGAGAAGCGTAATGCAAGGGAGGTCGAGGATTCAGCAGCAGCAAGTTGTTCGAGAGGTTCTCTTGTCCATGCTTCCTCCAGGTGCGCCTGCTCAGTTTAGGAAACTGTTTCCACCAACAAAGTGGGCTGAGGAATTCAATGCAGCCTTAACAGTGCCATTTTTTGGATGGTTGGTCGGACCCTCTGAGGTGGTGGAAGTGGAGGTAAACGGCTCAAAGCAAAGAAGTGGAGTTCACATAAAGAAATGCAGATACTTGGAAAATAGTGGGTGTGTGGGGATGTGCGTGAATATGTGCAAGATTCCTACCCAAGATTTCTTCACCAATGAGTTTGGACTTCCATTAACAATGATCCCTAATTTCGAAGACATGAGTTGTGAGATGATATATGGCCAAACCCCACCACCATTTGAAGACGACCCCGTCTCCAAACAGCCTTGTTTTGCAGAAATTTGTAAGTTTTAG 741 46.29 MAVLSLQVVHYKPQKLYSYSRGSRYTSVKTIRCGISEASGVPAPMGQKTKYNDGIFERVFMTLFAKKMGKFGKSEMKKEWWNLYEYESFVDVSRSVMQGRSRIQQQQVVREVLLSMLPPGAPAQFRKLFPPTKWAEEFNAALTVPFFGWLVGPSEVVEVEVNGSKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMIPNFEDMSCEMIYGQTPPPFEDDPVSKQPCFAEICKF 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1856659 1858958 + Bpe021069.1 Bpe07g00257 106026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00257 246 Pfam Beta-carotene isomerase D27-like, C-terminal 149 230 IPR025114 GO:0005506
Bpe07g00257 246 PANTHER BETA-CAROTENE ISOMERASE D27 1 245 IPR038938 -
Bpe07g00257 246 PANTHER OS08G0114100 PROTEIN 1 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00257 - - - jre:108993810 395.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00698 Bpe07g00257 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00582 Bpe-Chr6:16724322 Bpe07g00257 Bpe-Chr7:1856659 3.77E-36 dispersed
Bpe07g00257 Bpe-Chr7:1856659 Bpe10g00388 Bpe-Chr10:11453275 2.50E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g148 . Blo03g00254 Bda06g00153 . Bpe05g00698 Bpe07g00257 . . . . . . Car02g00675 . . . . . . . . . . . . . . . . . . Cone8ag0240 . . . . . . . . . . . . . Bma05g00882 . . Cmo02g00935 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012818 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 2 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00257 Bpe_Chr07 FPKM 100.137604 110.231842 96.125763 92.211502 80.51873 71.095871 75.601654 71.99955 77.73465 75.145844