Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00262 ATGACATATGAACAAGGCTTCATTGCTGCTTATTCTGGTGAAGGTTGGAAAGGATACAGCTTGGAGAAGTTAAAGTCAGAAAAGGAGCTTCAGCGGGCCACAAATGAAACAATGCGACGCAAGTTGAAAATAAGAGATCTGTTTAAACATCTTGATTGGCTTTGTGTTGAGGGAAGATTTTCAGAATCTATGTTCGATTCTGAAGGACAAATTGACAGTGAGGATATATTCTGCGCAAAATGTGGATCAAAAGAAATGTCTACTACTGATGACATTATACTCTGTGATGGGGCCTGTGACCGTGGTTTCCACCAGTTCTGTTTAGAACCACCATTGCTAAATGATGATATTCCGCCAGATGATGAGGGTTGGCTGTGCCCTGGTTGTGATTGCAAAGTTGACTGCATCGATTTGCTTAATGACTCTCAAGGATCAAAATATTCTCTCACTGACAGTTGGGAGAATGTTTATCCTGAGGCTGCTGCTGCAGCAGCTGTTGGACACAATAATGATCAGCACTTTGGCCGTTCTTCAGATGATTCAGATGATAATGATTTTGATCCAGATGGTCATGAAACTGATGATCAAGGTGGTGAATCAAGTTCTGATGTATCTGAGGATAATTCTGAATCTGAAAAATTAGAGGCTTCACCTAAAGACAACCAATATGTAGGACTTCCTTATGATGATTCAGATGATGATGAGTGTAATCCTGGGGCTCCAGATACTGAAGAAAATATTAAGTCAGAAAGTTCTAGTTCTGATTTTACATCGGATTCTGAGAATCTTGCAGCCATTCTCGAAGATGATGGGCCTTCTAGGAATGAAAATGACCTAATCAGGAAAAAGAGCAGCAAAAATGGTCGGGGAAAGCATTCATTGAAGGACGAGCTTTCATCTATACTAGAGTTGCGACATCTACATAGACTTTCCCCTATTGTCAGCAGACAGCATGTGGAGCGATTGGACTATGAGAAGCTACATGATGAGACATATGGAAATGTTTCTTCAGACTCACGTGATGATGAGGATTGGACCAATATTGCTGTGCAGAGGAAGAAAGATTGTGTACTGGTTTCTCCAGCTCAACAAAACAGAAAATCTTCAGTTGTTGAGAAGGAAGAAACATATGGAATTGTTTTTTCTGACTCAAGTGATGATGAAGATCGACTGATATTGCTGCAAAGAGGAAGAAAAATTATGGACTGGTTTCTCCAGCAGCAGAAAATGGAAAATCTTCAGATACTTCGTATATCATTCAAAGAAATTCAGTACCCAGACAAACGGGCAAAAGAAACTTTGGCTAAAGATCCAGGACTCAATTTCAAGCAGGTTAGCAAATGGTTTGAAAACACTAGCTGGAGTACACGTCATCCATCGCATGTGAAGGCAACTGCAAATGCAAATACAGATGAATCTGAAAGCGCTTTGCAGAAAGGTACTCCGATGTCTCACTCATTCATAAAACCTGAGCCAGAATTGGATACCGGTCACAGAGGTGGCACTTGCAGCAGCGCTCATCTCATAAAATCTCCCAGGGCCAGTGATGTTCCACCATTTGAAAGTGAGGATACAAAGGATGGCATTTTGGGGAGTCATACGACCAGTAGACGACAACCTAATTCCATTAGATCTAGAAAAAGAAAAGGCAGATCAGAACATATAGCTGTCGTTACTGATGCTAGTATTATGGAGAAACAAAAGCCTCTTGCTGGGTCATCAAAAGCCCATGAAGGTCAAGCCAACGGCCATATTAGGACAAGAAGGCGGACATTGATGGCTACCAATACTGATAGTGCACAAAAATCTCTTGTTGAGTCATCAAAAGCCAATGTAGATCGAGAAAATCACCGGATTAGGACACGAAGACAGAAATTGATTGCTTAA 1887 41.07 MTYEQGFIAAYSGEGWKGYSLEKLKSEKELQRATNETMRRKLKIRDLFKHLDWLCVEGRFSESMFDSEGQIDSEDIFCAKCGSKEMSTTDDIILCDGACDRGFHQFCLEPPLLNDDIPPDDEGWLCPGCDCKVDCIDLLNDSQGSKYSLTDSWENVYPEAAAAAAVGHNNDQHFGRSSDDSDDNDFDPDGHETDDQGGESSSDVSEDNSESEKLEASPKDNQYVGLPYDDSDDDECNPGAPDTEENIKSESSSSDFTSDSENLAAILEDDGPSRNENDLIRKKSSKNGRGKHSLKDELSSILELRHLHRLSPIVSRQHVERLDYEKLHDETYGNVSSDSRDDEDWTNIAVQRKKDCVLVSPAQQNRKSSVVEKEETYGIVFSDSSDDEDRLILLQRGRKIMDWFLQQQKMENLQILRISFKEIQYPDKRAKETLAKDPGLNFKQVSKWFENTSWSTRHPSHVKATANANTDESESALQKGTPMSHSFIKPEPELDTGHRGGTCSSAHLIKSPRASDVPPFESEDTKDGILGSHTTSRRQPNSIRSRKRKGRSEHIAVVTDASIMEKQKPLAGSSKAHEGQANGHIRTRRRTLMATNTDSAQKSLVESSKANVDRENHRIRTRRQKLIA 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1883715 1888237 - Bpe021074.3 Bpe07g00262 106031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00262 628 PANTHER HOMEOBOX PROTEIN HAT3.1 1 491 - -
Bpe07g00262 628 Coils Coil 21 41 - -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 457 482 - -
Bpe07g00262 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 134 IPR013083 -
Bpe07g00262 628 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 491 - -
Bpe07g00262 628 ProSiteProfiles 'Homeobox' domain profile. 411 459 IPR001356 GO:0003677
Bpe07g00262 628 MobiDBLite consensus disorder prediction 608 622 - -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 457 628 - -
Bpe07g00262 628 CDD homeodomain 410 451 IPR001356 GO:0003677
Bpe07g00262 628 SUPERFAMILY FYVE/PHD zinc finger 67 135 IPR011011 -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 244 261 - -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 170 294 - -
Bpe07g00262 628 Pfam PHD-finger 77 132 IPR019787 -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 517 531 - -
Bpe07g00262 628 Gene3D - 406 471 - -
Bpe07g00262 628 SMART HOX_1 398 463 IPR001356 GO:0003677
Bpe07g00262 628 ProSiteProfiles Zinc finger PHD-type profile. 75 132 IPR019787 -
Bpe07g00262 628 SMART PHD_3 77 130 IPR001965 -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 589 607 - -
Bpe07g00262 628 CDD PHD_PRHA_like 77 129 IPR045876 -
Bpe07g00262 628 ProSitePatterns Zinc finger PHD-type signature. 78 129 IPR019786 -
Bpe07g00262 628 MobiDBLite consensus disorder prediction 271 294 - -
Bpe07g00262 628 Pfam Homeodomain 410 451 IPR001356 GO:0003677
Bpe07g00262 628 SUPERFAMILY Homeodomain-like 410 458 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00262 - - - qlo:115967836 518.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00488 Bpe07g00262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02070 Bpe-Chr2:22216373 Bpe07g00262 Bpe-Chr7:1883715 2.37E-45 dispersed
Bpe07g00262 Bpe-Chr7:1883715 Bpe12g00344 Bpe-Chr12:8516957 4.36E-06 dispersed
Bpe05g00488 Bpe-Chr5:19116348 Bpe07g00262 Bpe-Chr7:1883715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21612 PF00628 PHD 4.00E-10 CL0390 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00262 Bpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0