Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00280 ATGGGTGCTCCAAAGCAGAAATGGACACAAGAAGAAGAAGCAGCCCTTAAAGCTGGAATTGTTAAGCATGGAGCCGGAAAGTGGCGAACGATACTCAAGGATCCTGAATTCAGTGGTGTCTTATACCTGCGTTCGAATGTAGATCTAAAGGATAAGTGGAGAAACATGACTGTAATGGCTAATGGATGGGGGTCCAGAGAGAAAGCGAGGTTAGCACTCAAGAAGCAACATGTTCCTCAACTAGATGAGAATTCTGTCGCTCTCAGTGTTATGGCCCAAAGTGATGAAGAAATAGTAGATGCTATGCCTTCGGTTGTTTCTTCTGATAAGCCTCACCATGCTAAGCCACAGAGATCTACAGTAAGGTCAGAATTGGATTTACAATTTTTGTTTATTACCACAGTTTTTTTTGGAGCAATAATTTCTAGGTTGGACAATCTTATATTGGAGGCAATTTCTATGTTGAGGGAGCCTGGTGGTTCTAACAAGACAGCTATTGCTTCTTACATAGAGGACCAATATTGGGCGCCTCCAGACTTCAAGAGGCTGTTGTCCACAAAACTAAAGCTTTTGACAGTTAGCGGAAAACTAAGCAAGGTAAGAAAATTCAATGGAGATAATAATGATAATGATAACGTTAAGGTTTTGACTGATTTGGCTATATTTTCCCAGGTGAAACGAAAATACAGGATTGCGCCAGCTTTAGCGATTTCTAGCAAAAGAAGCTCCTCCATGTTATTATTGGAGGGTCGGCAGAGGCTATCTCCAAGAGTCGATAAGGACTTAATTATTCTTACAAAAGACCAGATCGATGTAGAATTAGGTAGAATGAGGATGATGACTGCCGAAGAGGCAGCTGAGGCAGCTGCTGTGGCAGTTGCAGAGGCAGAAGCAGCCATTGCAGAAGCTGAAGAGGCAGCCAGGGAGGCCGAGGCCGCTGAAGCTGATGCTGAAGCAGCTCAGGCTTTTGCAGAAGCTGCCTTAAAAACGGTCAATGGAAGGAACCTCCCAAAGACGGTAATTTTTCTAGAATGCTTTTGCAATTTCATGCCTACCGAATGTTTGTTGATTAATGTCTAA 1080 43.06 MGAPKQKWTQEEEAALKAGIVKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMTVMANGWGSREKARLALKKQHVPQLDENSVALSVMAQSDEEIVDAMPSVVSSDKPHHAKPQRSTVRSELDLQFLFITTVFFGAIISRLDNLILEAISMLREPGGSNKTAIASYIEDQYWAPPDFKRLLSTKLKLLTVSGKLSKVRKFNGDNNDNDNVKVLTDLAIFSQVKRKYRIAPALAISSKRSSSMLLLEGRQRLSPRVDKDLIILTKDQIDVELGRMRMMTAEEAAEAAAVAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTVNGRNLPKTVIFLECFCNFMPTECLLINV 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2001529 2003662 - Bpe021090.3 Bpe07g00280 106049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00280 359 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bpe07g00280 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bpe07g00280 359 PANTHER SINGLE MYB HISTONE 4 1 339 IPR044597 GO:0003691
Bpe07g00280 359 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Bpe07g00280 359 SUPERFAMILY Winged helix DNA-binding domain 143 201 IPR036390 -
Bpe07g00280 359 CDD SANT_TRF 6 57 - -
Bpe07g00280 359 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 140 233 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bpe07g00280 359 Coils Coil 279 323 - -
Bpe07g00280 359 SMART sant 4 59 IPR001005 -
Bpe07g00280 359 Gene3D - 2 59 - -
Bpe07g00280 359 Gene3D - 142 215 IPR036388 -
Bpe07g00280 359 SMART h15plus2 138 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bpe07g00280 359 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 339 - -
Bpe07g00280 359 Pfam linker histone H1 and H5 family 145 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bpe07g00280 359 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00280 Bpe-Chr7:2001529 Bpe15g00295 Bpe-Chr15:14417954 6.38E-66 dispersed
Bpe07g00280 Bpe-Chr7:2001529 Bpe13g00131 Bpe-Chr13:8328916 1.48E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21614 PF00538 Linker_histone 3.20E-07 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00280 K09422 - csin:114320961 327.405