Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00288 ATGCGCCGGACGGGTTTGCCTGCGCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCTTCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATTAAAGCCATTATCACGGCTCAAGAGGTGCTTCTGTTGAACTCTAGAGACCCCTCGGTGACGCCCTTTGTTGAAGAGCTACAGAGACGGATACTGCGTCACCACCAAGCCACCAAGGCACAAGAGGGTGATGGCACTGATTCAAATTGGACTGATGTCTATGATTTGGGAGAGGCAAGATCAAGGGCCGTAAGTCCAGAAAATTCATATAAAGGATTTCCACCGTCTCAAGAAGGAAAAGTGGAAGGAAAGGAAGGTGGGAAACAAGGTCTTGATAACCACGATGGATTAAAGGTTCTACCATTTGAGTTTGTTGCATTGGAAGCATGCCTTGAATCTACTTGCAGTAACTTAGAGAGCGAAGCTAAGACATTGGAGCAAGAGGCTCACCCAGCTTTGGATAAGCTGACTTCCAAGATCAGTACTCTCAATTTGGAACGTGTTCGTCAAATCAAAAGCCGATTGGTTGCAATAACCGGTCGAGTGCAAATGAGGGATGAATTAGAACATTTGCTTGATGACGATGACGATATGGCTGAGATGTATTTGACAGAGAAGTTGGCTCAACAACAACTAGAAAACTCTTCCACATCCTCAATGGATGATGGAAATAACAAGGACGATGAAGCTCTTCCCTCAGATATCGACCTCAGGCACTGTATCAGGTTACCTGCCGAAATATCAGCAGATGGTGGTGGCATCCCAAGTAATTATGAAAGTGACATACAGAACAATGAAGAACCTCAACACCTGCTTTTTGGTGGACCTAATGCACTTAGCCATCGAACCCATACGAGCACTACTCATAGTGCTTTAAGCAAACACCTTGATGTGGAGGAGCTTGAAATGCTTTTAGAGGCATACTTTGTTCAAATCGATGGTACTTCAAACAAACTATCTACGCTTCGAGAGTACGTGGACGACACAGAAGATTACATAAACATAATGTTGGACGACAAACAGAACCATCTTCTCCAAATGGGAGTTATGTTAACGACAGCAACTCTCGTGGTCAGCGCCTTCGTTGTGGTGGCTGGAATATTTGGCATGAACATACACATTGAGCTCTTTGACCCAGAGCTAGCAGGTATGCCTGAATTTCTTTGGACGGTCGGTGGAAGTGCTGCAGGAAGCGTTGTCCTCTATGTGATTGCCATTGCCTGGTGCAAATACAAACGCTTGCTCGAGTGA 1302 45.24 MRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAQEVLLLNSRDPSVTPFVEELQRRILRHHQATKAQEGDGTDSNWTDVYDLGEARSRAVSPENSYKGFPPSQEGKVEGKEGGKQGLDNHDGLKVLPFEFVALEACLESTCSNLESEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQMRDELEHLLDDDDDMAEMYLTEKLAQQQLENSSTSSMDDGNNKDDEALPSDIDLRHCIRLPAEISADGGGIPSNYESDIQNNEEPQHLLFGGPNALSHRTHTSTTHSALSKHLDVEELEMLLEAYFVQIDGTSNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDPELAGMPEFLWTVGGSAAGSVVLYVIAIAWCKYKRLLE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2078333 2081725 - Bpe021097.1 Bpe07g00288 106057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00288 433 MobiDBLite consensus disorder prediction 227 248 - -
Bpe07g00288 433 Pfam CorA-like Mg2+ transporter protein 310 423 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bpe07g00288 433 CDD Mrs2_Mfm1p-like 1 431 IPR039204 -
Bpe07g00288 433 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 1 433 - -
Bpe07g00288 433 Gene3D - 1 52 - -
Bpe07g00288 433 Gene3D Magnesium transport protein CorA, transmembrane region 114 361 - -
Bpe07g00288 433 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 433 IPR039204 -
Bpe07g00288 433 Coils Coil 145 165 - -
Bpe07g00288 433 MobiDBLite consensus disorder prediction 98 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00288 - - - mnt:21394404 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00288 Bpe-Chr7:2078333 Bpe13g01373 Bpe-Chr13:18972938 7.92E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g735 . Blo03g00064 Bda06g01175 . Bpe07g00288 . . Bma12g00295 Cmo19g00556 Cmo11g01427 . . . . . Cpe04g00333 . . . . . . . . Cla02g00695 Cam02g0728 Cec02g0743 Cco02g0767 Clacu02g0739 Cmu02g0734 Cre02g1047 . Cone8ag1071 Cone3ag1040 . . Csa07g00673 . Cme01g00132 . . . . . . . . . . . Cma11g01693 Cma19g00542 Car11g01150 Car19g00399 . . . . . . . . . . . . . . . . . . Chy01g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G16010 76.8 1.3e-182 636.0
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G16010 56.2 2.7e-114 409.1
Bpe05g00868 . 1 367 MRS2 Gene Family AT5G64560 78.4 3.0e-151 531.6
Bpe07g00288 . 1 433 MRS2 Gene Family AT3G19640 64.8 3.3e-134 475.3
Bpe07g00026 . 1 446 MRS2 Gene Family AT3G58970 64.7 2.2e-145 512.3
Bpe13g01373 . 11 391 MRS2 Gene Family AT2G03620 67.8 3.9e-131 464.9
Bpe07g00026 . 61 445 MRS2 Gene Family AT4G28580 50.3 8.5e-91 330.9
Bpe05g00868 . 1 329 MRS2 Gene Family AT5G09690 73.7 6.2e-121 430.6
Bpe05g00868 . 23 289 MRS2 Gene Family AT5G09720 66.4 1.2e-81 300.1
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G80900 75.5 3.1e-179 624.8
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G80900 56.1 2.9e-113 405.6
Bpe08g01293 . 121 460 MRS2 Gene Family AT5G22830 82.1 2.2e-156 548.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00288 Bpe_Chr07 FPKM 11.356188 14.268229 9.119317 10.303489 11.825196 11.228718 12.47847 19.805475 18.91782 19.821516