Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00293 AAAATGAGAGAGTGCATCTCGATCCACATCGGCCAGGCCGGTATTCAGGTCGGAAATGCATGCTGGGAACTTTACTGTCTCGAGCACGGTATCCAGCCTGATGGCCAAATGCCGAGTGACAAGACTGTTGGTGGAGGTGATGATGCCTTTAACACCTTCTTCAGCGAAACTGGTGCTGGCAAACATGTTCCTCGGGCTGTATTTGTTGATCTTGAGCCCACAGTCATTGATGAGGTCAGGACTGGAGCTTACCGCCAGCTCTTCCACCCAGAGCAGCTTATCAGTGGCAAGGAAGATGCTGCCAACAATTTTGCCCGTGGTCATTATACCAGTAAGCCCTTAAACTTACTTATGATGCGTGTATCAGTTGGGAAGGAGATTGTTGACCTCTGCTTGGATCGAATCAGAAAGCTTGCTGATAACTGCACTGGTCTTCAAGGGTTTCTTGTTTTCAATGCTGTTGGTGGGGGCACTGGTTCTGGGCTTGGCTCACTCCTTTTAGAACGATTATCTGTTGACTATGGAAAGAAATCCAAGCTGGGTTTCACTGTTTACCCCTCCCCACAGGTTTCAACTTCTGTTGTTGAACCCTACAACAGCGTTTTGTCAACTCACTCCCTCCTGGAGCATACTGATGTTTCTGTCCTCCTTGACAATGAGGCCATTTACGACATATGCAGGCGCTCCCTGGACATCGAGAGACCCACCTACACTAACCTCAATCGTCTAGTCTCTCAGGTGATTTCTTCATTGACTGCTTCTCTAAGGTTTGATGGCGCCTTGAATGTGGATGTTACTGAATTCCAGACCAATCTGGTCCCCTACCCAAGAATCCACTTCATGCTTTCTTCATACGCACCTGTCATTTCTGCTGAGAAGGCTTACCATGAACAACTCTCGGTGGCTGAAATCACAAACAGTGCCTTTGAACCCTCATCCATGATGGCTAAATGTGATCCCCGCCATGGTAAGTATATGGCCTGCTGTCTTATGTACCGTGGAGATGTTGTACCCAAAGACGTCAATGCAGCAGTGGCCACCATCAAGACCAAGCGTACCATACAGTTTGTTGACTGGTGCCCCACTGGATTCAAGTGTGGCATAAACTACCAGCCACCAACTGTTGTCCCTGGAGGTGATCTTGCCAAGGTTCAGAGGGCTGTTTGTATGATTTCCAACTCCACTAGCGTTGCAGAGGTGTTCTCTCGTATCGATCACAAATTTGACCTCATGTATGCGAAGAGGGCCTTCGTGCACTGGTATGTTGGCGAGGGAATGGAGGAAGGAGAGTTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTGGAGAAGGATTATGAGGAGGTTGGACTGGAGACTGGTGAAGGTGATGAGGACGATACTGAGGAATATTGA 1392 48.64 KMRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTSKPLNLLMMRVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLETGEGDEDDTEEY 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2116573 2118831 + Bpe021103.1 Bpe07g00293 106062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00293 463 Coils Coil 431 451 - -
Bpe07g00293 463 PANTHER TUBULIN ALPHA CHAIN 2 460 - -
Bpe07g00293 463 PRINTS Alpha-tubulin signature 360 373 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 46 59 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 435 451 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 334 355 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 174 185 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 161 173 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 373 392 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 287 302 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 133 141 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 227 239 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 19 34 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Alpha-tubulin signature 398 414 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 SUPERFAMILY Tubulin nucleotide-binding domain-like 2 257 IPR036525 -
Bpe07g00293 463 Gene3D - 282 396 IPR037103 -
Bpe07g00293 463 CDD alpha_tubulin 3 448 - -
Bpe07g00293 463 PANTHER TUBULIN 2 460 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 155 161 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bpe07g00293 463 Pfam Tubulin/FtsZ family, GTPase domain 4 226 IPR003008 GO:0005525
Bpe07g00293 463 SMART Tubulin_C_4 261 406 IPR018316 -
Bpe07g00293 463 Pfam Tubulin C-terminal domain 276 405 IPR018316 -
Bpe07g00293 463 SUPERFAMILY Tubulin C-terminal domain-like 259 448 IPR008280 -
Bpe07g00293 463 Gene3D Helix hairpin bin 397 449 IPR023123 -
Bpe07g00293 463 PRINTS Tubulin signature 191 204 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 54 73 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 166 187 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 205 225 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 121 145 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 393 421 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 11 31 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 PRINTS Tubulin signature 147 165 IPR000217 GO:0005874|GO:0007017
Bpe07g00293 463 Gene3D Tubulin/FtsZ, GTPase domain 2 281 IPR036525 -
Bpe07g00293 463 SMART Tubulin_4 50 259 IPR003008 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00293 K07374 TUBA; tubulin alpha - gmx:100779027 851.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00353 Bpe-Chr1:2226857 Bpe07g00293 Bpe-Chr7:2116573 7.19E-18 dispersed
Bpe07g00293 Bpe-Chr7:2116573 Bpe14g00506 Bpe-Chr14:4482137 0 dispersed
Bpe07g00293 Bpe-Chr7:2116573 Bpe02g01172 Bpe-Chr2:15402529 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00293 Bpe_Chr07 FPKM 109.385963 119.927689 161.561478 164.058075 118.437996 111.795647 115.773186 272.268677 268.50589 258.724274