Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00295 ATGAGGTTAAAAGGAGAAATTTCTTATGAAAAGGGAGAGGAGGAGGATGAGCAGAATGAAGTCCATTACCAGTTAGGTATGGAGAATTCCGGCGATATTTCACCGAAGCTGAGTCTCGTCGTCGGATACGCCTTGACGTCTAAGAAAAGGAAGAGTTTCTTGCAGCCCAAGTTTCTTAGTTTGGCTCGGAATAAGGGGATTTTTTTTGTTGCCATAGATTTAAACAGGCCCCTGTCTGATCAAGGTCCTTTTGACATTGTTTTGCATAAGTTGTCCGGAAAGGAATGGTGCGAGATTATTGAGTTGGTTTTATTCTCCGAACCATCTGTTTTTTTTTTCCTTTTAAAGGACTACAAACTAAGACACCCAGATGTTACAATCCTTGATCCGCCCCATGCAATTGAACGGCTTGGAAATCGTGAAATCATGCTTGAAGATGTAGCTGATCTAAACTTGACCGAGTGTTATGGAAGGGTTGGTATTCCCAGACAGCTGGCCATTACCAAACAAATTTCATCTATTTCTTATGAAGTCACAAAAGCTGGCCTAACATTGCCGCTTGTTGCAAAACCTCTTCTTGTGGATGGAAGCAACAAATCACACGAGCTGTTTCTTGCTTATGATCAATTTTCCCTTGCGGAACTTGAACCTCCTTTGGTCCTACAGGAGTTTGTTAATCATGGTGGTATTCTCTTCAAAATTTATGTTGTTGGGGAAACCATAAAAGTTGTTAGGCGTTTTTCTCTACCTAATGTAAGTAAATGTGAGCTTGAAAAAGTTTCTGGCGTGTTTCCTTTCCCAAGGGTTTCATCTGCTGCAGCTTCTGCAGATGATGCAGATTTGGATCCTACTGTTGCTGTGTTGGAAACTACTGCTGTATTAATGCCCCTTGGTATTACTATTTATGGTGCAGAACATCCACCCAAGCTATTGCTTGAAAGGCTTGCTAGAGAGCTCCGTCAACGATTGTTTATACAGCTATTTCATATTAATTTTCTCATTCTGATCTCTTTAGTGACTACGCTTCCTGATGAGTTTCCAGACGCCCATGCCACCATTAATGACTTGAGGCTTGAGTATGTGGTTGCTGTGGAAGGAATTGTCCGGTCTCGGCCTAGTGAGTCGATTAATAAAAAGATGAAAACTGGCTTGATAGAGGTTGCTGCAGAGAATGTTCAAGTTTTGAATGCTGTAAGATTAAAGTTGCCATTCTTAGTTACGACGGGGGATGATGCAAAAGATTCTGCTAAAGAAGAAATACGTTTGAGATACCGATACCTTGATCTGCGGAGGCAGCAAATGAATGTTAACTTAATGTTGCGGCATAAAGTGGTGAAGCTCATTCGAAGATTTTTGGAGGATATTCATGATTTTGTAGAGATTGAGACTCCAATACTTTCTAGATCTACTCCGGAAGGTGCCCGAGATTATTTGGTACCGTCTAGAGTACAGCCAGGAACTTTCTATGCGTTACCGCAAAGTCCGCAGCTGTTTAAGCAAATGCTTATGGTTTCTGGTTTTGACAAATACTATCAAATAGCAAGATGTTTCCGAGATGAGGACTTAAGAGCAGATCGACAACCTGAATTTACTCAGCTTGATATTGAATTAGCATTCCCCACATTGGAGAACATGCTGAATCTTAATGAAGAATTGATTAGAAAGGTTTTTTGGGAAATCAAAGGAGTTCAGCTGCCAAATCCTTTCCCAAGGCTTACATATTCCGAAGCCATGAGTCGATATGGTTCAGATAGACCAGATACAAGATTTGACCTTGAGTTGCGAGATGTGACTGATTTCTTCGTTGACTCCAGCTTCCAGGTTTTTGCAAATGCTCTAAAAGGCGGAGGAATTATCAAAGCGCTTTGTGTGCCATCGGGTGCTAAAATTTATTCAAACTCGGCTCTTAAAAAAGGGGATATTTACAATGAAGCGATGAAATCAGGAGCAAAAGGGTTGCCCTTCCTCAAAGTCTTAAATGATGGTGAGGTCGAAGGTATTCCAGCACTCGTATCAACCTTGGGCCCTTTGGATAAGGAGATGTTTTTGAGACGTTGTTGTGCTGGGCCGGGAGATATTATCTTATTTGCCGTTGGCTCTCGCGCTGCTGTAAATAGAACCCTTGATCATCTTAGAATATTTGTTGCTCATCAGCTCGGTTTGGTGGATCAGTTGAAACATTCGATTCTGTGGGTGACCGATTTCCCAATGTTTGAGTGGAATGAGTCAGAGCAGAGGCTTGAGGCCTTGCATCATCCTTTCACTGCTCCAAACCCAGAAGATATGAATGATCTTTCTTCTGCCCGAGCTCTTGCATACGACATTGTCTACAATGGGGTGGAGATCGGTGGGGGAAGCTTGAGAATTTACAAACGTGATATTCAACAGAAAGTTTTGGAGATTGTGGGCATCTCTCCCGAACAGGCCGAAGCGAAGTTCGGATACCTTTTAGAGGCATTAGACATGGGTGCTCCTCCTCACGTGACATCTTTAGACATAACTAGGCGAATTGGAGATTATATGCATATATTTTCTTTTTCAGGGGGGATTGCTTATGGATTGGATAGATTAGTCATGTTATTGGCAGGAGCCAATTCAATAAGAGACGTCATAGCTTTTCCGAAAACAACCACCGCGCAGTGTGCTCTTACGAGAGCTCCGTCAGAGGTGGACTCTCTGCAGCTCAAGGAACTATCGTATTTTGATAAATAG 2712 42.18 MRLKGEISYEKGEEEDEQNEVHYQLGMENSGDISPKLSLVVGYALTSKKRKSFLQPKFLSLARNKGIFFVAIDLNRPLSDQGPFDIVLHKLSGKEWCEIIELVLFSEPSVFFFLLKDYKLRHPDVTILDPPHAIERLGNREIMLEDVADLNLTECYGRVGIPRQLAITKQISSISYEVTKAGLTLPLVAKPLLVDGSNKSHELFLAYDQFSLAELEPPLVLQEFVNHGGILFKIYVVGETIKVVRRFSLPNVSKCELEKVSGVFPFPRVSSAAASADDADLDPTVAVLETTAVLMPLGITIYGAEHPPKLLLERLARELRQRLFIQLFHINFLILISLVTTLPDEFPDAHATINDLRLEYVVAVEGIVRSRPSESINKKMKTGLIEVAAENVQVLNAVRLKLPFLVTTGDDAKDSAKEEIRLRYRYLDLRRQQMNVNLMLRHKVVKLIRRFLEDIHDFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDIELAFPTLENMLNLNEELIRKVFWEIKGVQLPNPFPRLTYSEAMSRYGSDRPDTRFDLELRDVTDFFVDSSFQVFANALKGGGIIKALCVPSGAKIYSNSALKKGDIYNEAMKSGAKGLPFLKVLNDGEVEGIPALVSTLGPLDKEMFLRRCCAGPGDIILFAVGSRAAVNRTLDHLRIFVAHQLGLVDQLKHSILWVTDFPMFEWNESEQRLEALHHPFTAPNPEDMNDLSSARALAYDIVYNGVEIGGGSLRIYKRDIQQKVLEIVGISPEQAEAKFGYLLEALDMGAPPHVTSLDITRRIGDYMHIFSFSGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDSLQLKELSYFDK 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2128023 2144992 + Bpe021105.3 Bpe07g00295 106064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00295 903 SUPERFAMILY GAD domain-like 590 722 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bpe07g00295 903 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 316 900 IPR004524 GO:0005524|GO:0016874
Bpe07g00295 903 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 198 903 IPR004524 GO:0005524|GO:0016874
Bpe07g00295 903 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 156 333 IPR040464 -
Bpe07g00295 903 TIGRFAM aspS_bact: aspartate--tRNA ligase 344 899 IPR004524 GO:0005524|GO:0016874
Bpe07g00295 903 PRINTS Aspartyl-tRNA synthetase signature 491 503 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe07g00295 903 PRINTS Aspartyl-tRNA synthetase signature 508 521 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe07g00295 903 PRINTS Aspartyl-tRNA synthetase signature 817 831 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe07g00295 903 PRINTS Aspartyl-tRNA synthetase signature 773 789 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe07g00295 903 Gene3D - 573 722 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bpe07g00295 903 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 40 134 IPR041429 -
Bpe07g00295 903 Gene3D Bira Bifunctional Protein; Domain 2 413 827 IPR045864 -
Bpe07g00295 903 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 438 874 IPR006195 -
Bpe07g00295 903 SUPERFAMILY Class II aaRS and biotin synthetases 418 876 IPR045864 -
Bpe07g00295 903 Pfam tRNA synthetases class II (D, K and N) 418 877 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe07g00295 903 Gene3D - 166 264 - -
Bpe07g00295 903 Pfam GAD domain 609 708 IPR029351 -
Bpe07g00295 903 Gene3D Bira Bifunctional Protein; Domain 2 835 901 IPR045864 -
Bpe07g00295 903 Gene3D - 314 399 IPR012340 -
Bpe07g00295 903 SUPERFAMILY Nucleic acid-binding proteins 319 396 IPR012340 -
Bpe07g00295 903 Gene3D - 29 152 - -
Bpe07g00295 903 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 316 900 - -
Bpe07g00295 903 CDD AspRS_core 438 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00295 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - qsu:112040138 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00358 Bpe-Chr1:2247650 Bpe07g00295 Bpe-Chr7:2128023 4.29E-13 dispersed
Bpe02g02078 Bpe-Chr2:22293323 Bpe07g00295 Bpe-Chr7:2128023 3.65E-14 dispersed
Bpe07g00295 Bpe-Chr7:2128023 Bpe14g00508 Bpe-Chr14:4496846 1.18E-103 dispersed
Bpe07g00295 Bpe-Chr7:2128023 Bpe08g00823 Bpe-Chr8:10325183 7.46E-59 transposed
Bpe07g00295 Bpe-Chr7:2128023 Bpe11g00325 Bpe-Chr11:2387897 1.75E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00295 Bpe_Chr07 FPKM 0.456616 0.706334 3.575009 3.587662 13.541764 14.190078 16.097113 16.009304 14.031774 14.617472