Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00298 ATGGCTAAATTTTATTTAGTCTTTTGCTTTTGTTTCCTAACTCATCTCTCGCTTGCCCAAAACTCTCCTCAAGACTACGTCAATGCCCACAACACAGCTCGCTCAGATGTCGGAGTTGGATCAATCACTTGGGACGACAGCTTAGCAACCTGGGCTCAAAACTACATCAACACGCTCAGTGCCGATTGCCGAATGGTCCACTCTGGCGGGCCCTACGGCGAGAACCTTGCGTGGAGCTCCGACGACATGTCTGGCACCAGTGCAGTCGACCTCTGGGTGGCTGAGAAACCCTTTTACGACTACAACTCCAACTCTTGCATTGGAGGAGAGTGCCTACACTATACTCAAGTGGTGTGGCAAAACTCTGAACGGCTCGGTTGTGCTAAGATCAGTTGCAACAGTGGAGGCACTATCATCTCTTGCAACTATGATCCACGGGGTAATTTTATCGGCCAGAGACCATACTAA 468 49.79 MAKFYLVFCFCFLTHLSLAQNSPQDYVNAHNTARSDVGVGSITWDDSLATWAQNYINTLSADCRMVHSGGPYGENLAWSSDDMSGTSAVDLWVAEKPFYDYNSNSCIGGECLHYTQVVWQNSERLGCAKISCNSGGTIISCNYDPRGNFIGQRPY 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2161089 2161556 - Bpe021108.1 Bpe07g00298 106067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00298 155 SUPERFAMILY PR-1-like 1 155 IPR035940 -
Bpe07g00298 155 Gene3D CAP 20 155 IPR035940 -
Bpe07g00298 155 PRINTS Allergen V5/Tpx-1 family signature 88 101 IPR001283 -
Bpe07g00298 155 PRINTS Allergen V5/Tpx-1 family signature 42 60 IPR001283 -
Bpe07g00298 155 PRINTS Allergen V5/Tpx-1 family signature 111 127 IPR001283 -
Bpe07g00298 155 PRINTS Allergen V5/Tpx-1 family signature 138 151 IPR001283 -
Bpe07g00298 155 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 10 155 IPR001283 -
Bpe07g00298 155 CDD CAP_PR-1 23 155 - -
Bpe07g00298 155 Pfam Cysteine-rich secretory protein family 27 143 IPR014044 -
Bpe07g00298 155 PANTHER PATHOGENESIS-RELATED PROTEIN 1 10 155 - -
Bpe07g00298 155 ProSitePatterns CRISP family signature 2. 138 149 IPR018244 GO:0005576
Bpe07g00298 155 SMART SCP_3 21 151 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00298 K13449 PR1; pathogenesis-related protein 1 - tcc:18607284 239.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00298 Bpe-Chr7:2161089 Bpe07g00300 Bpe-Chr7:2171208 9.79E-58 dispersed
Bpe07g00298 Bpe-Chr7:2161089 Bpe07g00299 Bpe-Chr7:2166138 3.50E-91 tandem
Bpe05g00457 Bpe-Chr5:18925547 Bpe07g00298 Bpe-Chr7:2161089 1.11E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00298 Bpe_Chr07 FPKM 731.110474 801.564148 647.098328 621.508179 314.606659 396.177643 287.389557 358.423767 355.418182 305.699158
Bpe07g00298 Bpe_Chr09 FPKM 54.287086 60.979706 83.20166 80.827072 60.153088 65.696815 54.500275 59.36557 54.596596 51.368282
Bpe07g00298 Bpe_Chr13 FPKM 1153.764282 1192.89917 1494.392944 1427.233032 1114.091919 1403.871948 1038.636353 990.586304 966.322144 844.084351