Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00307 ATGGATCTGGCTTTTCCCTTTTCTTTGCTCGTCCTAATCTTGTTTTATACTTCTCCTGTCGCCGTTCTCTTCTCTCCGGTTTCCGCTTTGTCCTTTAATCTAACCAGCTTCGATTCCAGAGACGGCAACATCACTTACGAGAGAGCTTACGCTGCAAGAGGAGCAATCCAGCTAACGGGGGAGATAGCCAACAGAGCAACCCTCGGCCAGGCTACGTATTCCCAGGCTCTTCACCTCTGGGATAAAGCCTCCGGAAATCTCACAGATTTCTCGACTCATTTCGCCTTCGCTATCGATTCACAGAATAGATCGTTGTACGGCGATGGGCTAGCTTTTTTCTTTGCTCCCGAAAACACAAAGATCGATCCAAATATCACCAAGGGTGGAGGTTTGGGTCTAATCAACACCGAACAATCCCTGAACTCGACGGACCGGCCATTTTTTGCGGTGGAGTTTGATGTCTTTAGTAACGTTTGGGATCCGACTTATCACCATGTAGGTAATTCTACTGTTTTGACGAGTTTTTCTCATGTAATTGATCTAAGAACGTATTTGCCTGAGTATGTTACTATGGGATTTTCTGCTGCCACCGGAAATAATTCTGCACTTCATCGAATATATTCATGGGATTTCTCTTCTTCCACCATTGTTTTCCCCGATTTGACCGCTAATGTGACCCCCAACGGAACCACCACAGGAACTCCCGGTGGTGGAAATGCCGGCAAGGTGGGGCTTGCTGTAGGTTTGAGTGTTGGTGGCTTGGTTTTAGTGGCTTGTCTTGGTTTGGTCTGGTTATGGATTCGGAAGAGAAAAAGAAGGGGCGAAGAAGAAGATGAGGGGTTTGATGAGTATATGGATCCAGAAATTGAAATGGGTAATGGACCGAAGAGGTTTTTCTATTCAGAATTGGCTAGAGCGACCCATAATTTCAGTGTCTCTGAAAAGCTCGGACAAGGAGGATTTGGTGAAGTTTATAAAGGCTTTTTAGCAGACTTAAACACATATGTCGCCGTGAAGAGAGTGTCAAAGGGCTCTAGACAGGGGATTAAGGAGTATGCATCGGAAATACGGGTCATTAGTCGTTTGAGGCATCGTAATTTAGTGCAGCTAATCGGATGGTGCCATGAAAAGAAAGAACTTCTGCTGGTCTACGAATTGATGTCAAATGCAAGCTTGGATGCCCATCTTTTCAAAGAAAACTCCTTATTGACATGGGGAATTAGATACAAAATAGCTCAAGGAATCGCCTCTGCTTTACTTTATCTCCACGAGGAGTGGGAGCAATGTGTAGTTCATCGAGACATAAAATCGAGCAATGTCATGTTGGATTCGAACTTCAACGCAAAACTTGGAGATTTCGGGTTGGCTCGGCTGGTCGACCATGAAAAAGGGTCTCAAACCACGGTCCTAGCCGGCACATTCGGCTACATGGCCCCCGAATGTGCAACAACCGGTAGAGCAAGTAAAGAGTCTGATGTTTTCAGTTTCGGAATCGTAGCTTTAGAAATTGCATGTGGGAGAAAACCCATCAACCCAAAAGCCAACCTCGATGAAATAGTGATGGTCGAGTGGGTGTGGAAGCTCTACGGTGACGGAAACATTCTTGAAGCTTCTGACCCAAAACTTTCCCGAGACTTCGATTCGAGGCAGATGGAATGTTTGATGGTTGTTGGACTGTGGTGTGCTCATCCAGACATCAATTACAGGCCTGCAATCAGACAGGCAATTCAGGTTCTTAATTTTGAGGCTCCACTTCCTTCTCTTCCACCCAAAATGCCTGTGCCCACTTATCTCTCTCCTCCTCCAAAACAAGTGTCCTCTTTTTCAGTCACTGCAAATGACACTGAAGTTGAAAATGGCAAAGCCCAGTATCCCAATTATAGTTATTCTACCAATTCTTCAGAGGCTACTACCTCAAGCTCAGCTGCTGACCATTCAACTGCTGCCCTTTTGCATGCTCGCTAA 1965 45.6 MDLAFPFSLLVLILFYTSPVAVLFSPVSALSFNLTSFDSRDGNITYERAYAARGAIQLTGEIANRATLGQATYSQALHLWDKASGNLTDFSTHFAFAIDSQNRSLYGDGLAFFFAPENTKIDPNITKGGGLGLINTEQSLNSTDRPFFAVEFDVFSNVWDPTYHHVGNSTVLTSFSHVIDLRTYLPEYVTMGFSAATGNNSALHRIYSWDFSSSTIVFPDLTANVTPNGTTTGTPGGGNAGKVGLAVGLSVGGLVLVACLGLVWLWIRKRKRRGEEEDEGFDEYMDPEIEMGNGPKRFFYSELARATHNFSVSEKLGQGGFGEVYKGFLADLNTYVAVKRVSKGSRQGIKEYASEIRVISRLRHRNLVQLIGWCHEKKELLLVYELMSNASLDAHLFKENSLLTWGIRYKIAQGIASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKLGDFGLARLVDHEKGSQTTVLAGTFGYMAPECATTGRASKESDVFSFGIVALEIACGRKPINPKANLDEIVMVEWVWKLYGDGNILEASDPKLSRDFDSRQMECLMVVGLWCAHPDINYRPAIRQAIQVLNFEAPLPSLPPKMPVPTYLSPPPKQVSSFSVTANDTEVENGKAQYPNYSYSTNSSEATTSSSAADHSTAALLHAR 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2237303 2239411 + Bpe021116.1 Bpe07g00307 106076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00307 654 PANTHER - 174 640 - -
Bpe07g00307 654 CDD STKc_IRAK 316 580 - -
Bpe07g00307 654 PANTHER - 19 167 - -
Bpe07g00307 654 ProSiteProfiles Protein kinase domain profile. 310 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe07g00307 654 MobiDBLite consensus disorder prediction 619 648 - -
Bpe07g00307 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 216 IPR013320 -
Bpe07g00307 654 SMART serkin_6 310 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe07g00307 654 Gene3D - 27 170 - -
Bpe07g00307 654 Pfam Legume lectin domain 174 215 IPR001220 GO:0030246
Bpe07g00307 654 Pfam Legume lectin domain 30 167 IPR001220 GO:0030246
Bpe07g00307 654 Gene3D - 171 218 - -
Bpe07g00307 654 Gene3D Transferase(Phosphotransferase) domain 1 387 599 - -
Bpe07g00307 654 Pfam Protein kinase domain 311 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe07g00307 654 SUPERFAMILY Protein kinase-like (PK-like) 294 605 IPR011009 -
Bpe07g00307 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Bpe07g00307 654 Gene3D Phosphorylase Kinase; domain 1 295 386 - -
Bpe07g00307 654 ProSitePatterns Protein kinases ATP-binding region signature. 316 339 IPR017441 GO:0005524
Bpe07g00307 654 PANTHER RECEPTOR LECTIN KINASE 174 640 - -
Bpe07g00307 654 PANTHER RECEPTOR LECTIN KINASE 19 167 - -
Bpe07g00307 654 CDD lectin_legume_LecRK_Arcelin_ConA 30 214 IPR001220 GO:0030246
Bpe07g00307 654 MobiDBLite consensus disorder prediction 619 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00307 - - - csin:114261330 709.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00307 Bpe-Chr7:2237303 Bpe15g00270 Bpe-Chr15:14084925 0 dispersed
Bpe07g00307 Bpe-Chr7:2237303 Bpe03g00755 Bpe-Chr3:27604068 1.18E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g833 . . . . Bpe07g00307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00271 . . . . . . . . . . . . . . . . . . . . Bhi10g01654 . . . . . . Cla09g01668 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63411 PF00069 Pkinase 2.40E-50 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00307 Bpe_Chr07 FPKM 6.684746 7.392172 22.492687 22.946554 5.148566 4.950322 6.054507 7.988976 7.452249 7.103038