Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00312 ATGCCGGAATCTAATCGCCAAGTTTCGTTGTTCGGGTCATCTAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCACGATGAAGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGATGGCCCTGCCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTTCCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGGGAAGTTTATGTGTTTGATGCCGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAGCGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCTGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGAAAAGAAGTAGCACTCAGGATGCAGCGGAACAAAGGCCAGTTTGCATCATCTAAAGCTAATTCTGATGAAGCCGGCTCAGCTTCTTCAATGTGGAGCCCAGGACAGGGTGCTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGGCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCGAATAAGGGAGTTTTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGACCCTTCTCTTAAAGATCCAGAGCAGGTAGCTTAA 870 47.13 MPESNRQVSLFGSSRPMNNNEDNNCTLQSHDEDEDDDVTGGEESIDDPQLRFEGGGGVDGPATVFSGAQNTAPCSTVYGPASDYHPASGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKANSDEAGSASSMWSPGQGAGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQVA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2282903 2289660 - Bpe021122.1 Bpe07g00312 106081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00312 289 ProSiteProfiles Tify domain profile. 89 124 IPR010399 -
Bpe07g00312 289 MobiDBLite consensus disorder prediction 1 25 - -
Bpe07g00312 289 MobiDBLite consensus disorder prediction 192 222 - -
Bpe07g00312 289 PANTHER GATA TRANSCRIPTION FACTOR 28 17 287 IPR045280 GO:0006355
Bpe07g00312 289 SMART tify_2 89 124 IPR010399 -
Bpe07g00312 289 Pfam CCT motif 156 198 IPR010402 GO:0005515
Bpe07g00312 289 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 MobiDBLite consensus disorder prediction 269 289 - -
Bpe07g00312 289 Gene3D - 219 280 IPR013088 GO:0006355|GO:0008270
Bpe07g00312 289 MobiDBLite consensus disorder prediction 28 43 - -
Bpe07g00312 289 CDD ZnF_GATA 229 274 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 SMART GATA_3 223 281 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 ProSiteProfiles GATA-type zinc finger domain profile. 223 279 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 MobiDBLite consensus disorder prediction 271 289 - -
Bpe07g00312 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 276 - -
Bpe07g00312 289 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Bpe07g00312 289 PANTHER GATA TRANSCRIPTION FACTOR 18 17 287 - -
Bpe07g00312 289 MobiDBLite consensus disorder prediction 1 66 - -
Bpe07g00312 289 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 Pfam tify domain 92 123 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00312 - - - jre:108983906 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00413 Bpe-Chr4:2603195 Bpe07g00312 Bpe-Chr7:2282903 4.23E-83 dispersed
Bpe07g00312 Bpe-Chr7:2282903 Bpe14g00482 Bpe-Chr14:4304540 3.27E-69 dispersed
Bpe07g00312 Bpe-Chr7:2282903 Bpe02g00145 Bpe-Chr2:998149 4.09E-85 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe05g00883 BCT 1 184 Tify Gene Family AT4G14720 53.1 3.4e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21615 PF06203 CCT 1.70E-16 CL0281 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00312 Bpe_Chr07 FPKM 1.401045 1.189811 7.805415 7.327724 1.956478 2.272389 3.11365 1.336517 1.697852 1.660346