Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00312 ATGCCGGAATCTAATCGCCAAGTTTCGTTGTTCGGGTCATCTAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCACGATGAAGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGATGGCCCTGCCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTTCCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGGGAAGTTTATGTGTTTGATGCCGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAGCGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCTGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGAAAAGAAGTAGCACTCAGGATGCAGCGGAACAAAGGCCAGTTTGCATCATCTAAAGCTAATTCTGATGAAGCCGGCTCAGCTTCTTCAATGTGGAGCCCAGGACAGGGTGCTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGGCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCGAATAAGGGAGTTTTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGACCCTTCTCTTAAAGATCCAGAGCAGGTAGCTTAA 870 47.13 MPESNRQVSLFGSSRPMNNNEDNNCTLQSHDEDEDDDVTGGEESIDDPQLRFEGGGGVDGPATVFSGAQNTAPCSTVYGPASDYHPASGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKANSDEAGSASSMWSPGQGAGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQVA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2282903 2289660 - Bpe021122.1 Bpe07g00312 106081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00312 289 ProSiteProfiles Tify domain profile. 89 124 IPR010399 -
Bpe07g00312 289 MobiDBLite consensus disorder prediction 1 25 - -
Bpe07g00312 289 MobiDBLite consensus disorder prediction 192 222 - -
Bpe07g00312 289 PANTHER GATA TRANSCRIPTION FACTOR 28 17 287 IPR045280 GO:0006355
Bpe07g00312 289 SMART tify_2 89 124 IPR010399 -
Bpe07g00312 289 Pfam CCT motif 156 198 IPR010402 GO:0005515
Bpe07g00312 289 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 MobiDBLite consensus disorder prediction 269 289 - -
Bpe07g00312 289 Gene3D - 219 280 IPR013088 GO:0006355|GO:0008270
Bpe07g00312 289 MobiDBLite consensus disorder prediction 28 43 - -
Bpe07g00312 289 CDD ZnF_GATA 229 274 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 SMART GATA_3 223 281 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 ProSiteProfiles GATA-type zinc finger domain profile. 223 279 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 MobiDBLite consensus disorder prediction 271 289 - -
Bpe07g00312 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 276 - -
Bpe07g00312 289 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Bpe07g00312 289 PANTHER GATA TRANSCRIPTION FACTOR 18 17 287 - -
Bpe07g00312 289 MobiDBLite consensus disorder prediction 1 66 - -
Bpe07g00312 289 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355|GO:0043565
Bpe07g00312 289 Pfam tify domain 92 123 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00413 Bpe-Chr4:2603195 Bpe07g00312 Bpe-Chr7:2282903 4.23E-83 dispersed
Bpe07g00312 Bpe-Chr7:2282903 Bpe14g00482 Bpe-Chr14:4304540 3.27E-69 dispersed
Bpe07g00312 Bpe-Chr7:2282903 Bpe02g00145 Bpe-Chr2:998149 4.09E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21615 PF06203 CCT 1.70E-16 CL0281 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00312 - - jre:108983906 401.364