Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00349 ATGTCATTCCGTAGCCTTGTGCGTGATGTAAGGGATAGTATCGGAAGCTTATCCCGGCGAGGATTCGACATCAGACTATCCGGTCATAGCTGCGGAAAATCGGACTGGTCACAAGGTGATTTGCAAGATCCGCTTGTGGGTCAAAGCAGTTGTTGGGCCAACCTCCCTCCCGAGCTCCTTTACGATGTAATTAGGAGGCTGGAGGAGAGTGAAAGCACATGGCCCTCCAGAAAGCATGTCATCGCCTGTGCTGCCGTTTGCCGTTCTTGGAGGAACACTTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGAAAGCTTACCTTTCCTGTGTCCCTAAAGCAGCCGGGGCCACGGGATGGAACCATCCAGTGCTTCATTAAAAGGGACAAGTCGAATTTAACTTACCACCTTTATCTGTGTCTTAGCCCTGGCAAGTATATTTCGGACAAATCTTTGCTAGTAGAAAATGGGAAATTTCTTCTTTCTGCAAAACGGACTCGAAGAACAACTAGCACTGAGTATGTTATCTCGATGGATGCCGAGAACATCTCAAGATCGAGTAGCAGCTACATTGGAAAACTACGATCAAATTTTCTTGGTACGAAGTTCATCATATACGACACGCAACCTCCATACACAGCCGTCTCCGTTCCTACTCCAGGTAAAACAAGTCGAAGATTCAACTCCAAAAAGGTATCCCCAAAAGTTCCGAGCGGTAGCTACAATATCGCCCAATTGGCTTACGAACTAAATGTGTTGGGCACGCGGGGCCCGCGGAGAATGCATTGTGTGATGCATTCAATCCCGCTCTCGTCTCTCGATGCTGGTGGGTCTGTCCCCGGCCAGCCAGAGCTCCTTCCACGCCCACTCGAAGACTCTTTCCGGAGCATTTCCTTCTCAAAATCTCTCGATTACTCTATGGAGTTCAGCAGCTCGAGGTTTTCCGAAATCAGCAGACGTATCGACAGTGAGGGGGAGGATAAGACGATGATGCCCTTGGTCCTGAAAAACAAGCCCCCAAGGTGGCACGAGCAATTGCAGTGCTGGTGTTTGAATTTCCGAGGGCGGGTAACTGTTGCTTCCGTGAAGAACTTTCAGTTAATTGCAGGCACACAACCAGGGGCTGGAGCTCCAACGCCATCTCAACCGACCCCGCCTGATCATGATAAGATAATTCTTCAGTTTGGGAAAGTTGGTAAAGACATGTTTACGATGGATTATCGTTATCCGTTATCGGCTTTTCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1299 48.11 MSFRSLVRDVRDSIGSLSRRGFDIRLSGHSCGKSDWSQGDLQDPLVGQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNTCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPGKYISDKSLLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSSYIGKLRSNFLGTKFIIYDTQPPYTAVSVPTPGKTSRRFNSKKVSPKVPSGSYNIAQLAYELNVLGTRGPRRMHCVMHSIPLSSLDAGGSVPGQPELLPRPLEDSFRSISFSKSLDYSMEFSSSRFSEISRRIDSEGEDKTMMPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTQPGAGAPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2736000 2737704 + Bpe021159.1 Bpe07g00349 106118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00349 432 ProSitePatterns Tub family signature 1. 354 367 IPR018066 -
Bpe07g00349 432 Gene3D - 48 100 - -
Bpe07g00349 432 SUPERFAMILY Tubby C-terminal domain-like 101 432 IPR025659 -
Bpe07g00349 432 Pfam F-box domain 52 99 IPR001810 GO:0005515
Bpe07g00349 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 432 - -
Bpe07g00349 432 PRINTS Tubby superfamily signature 354 370 IPR000007 -
Bpe07g00349 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Bpe07g00349 432 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Bpe07g00349 432 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Bpe07g00349 432 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Bpe07g00349 432 PRINTS Tubby superfamily signature 336 353 IPR000007 -
Bpe07g00349 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Bpe07g00349 432 PANTHER TUBBY-RELATED 1 432 - -
Bpe07g00349 432 Pfam Tub family 113 427 IPR000007 -
Bpe07g00349 432 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515
Bpe07g00349 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Bpe07g00349 432 Gene3D Tubby Protein; Chain A 109 432 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00217 Bpe-Chr4:1476882 Bpe07g00349 Bpe-Chr7:2736000 9.29E-143 dispersed
Bpe04g01142 Bpe-Chr4:10497415 Bpe07g00349 Bpe-Chr7:2736000 1.73E-150 dispersed
Bpe05g00852 Bpe-Chr5:21724757 Bpe07g00349 Bpe-Chr7:2736000 2.85E-141 dispersed
Bpe07g00349 Bpe-Chr7:2736000 Bpe09g00261 Bpe-Chr9:1905374 4.34E-122 dispersed
Bpe12g00743 Bpe-Chr12:12958388 Bpe07g00349 Bpe-Chr7:2736000 0 transposed
Bpe05g00406 Bpe-Chr5:18452789 Bpe07g00349 Bpe-Chr7:2736000 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21618 PF01167 Tub 1.70E-115 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00349 K19600 - jre:109007061 720.309