Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00352 ATGGAGAGAATGAAAGAAGAAAATATTGGGTTAAGGAAGGTGGTGGAGAAAATTATGAAAGACTACTACGATCTTCAAATGAAATTCTCAGTTATTCAACAAAACAGCCAAGAACAGGTAATTAATCCAGACTATCATTCTACTGTATTTTTCTTAAGCATCAATTTTTTTTTTGATTTCGTAATTATTAAGGATCTGAACCAGACATATTTCTCTCGTCCAAACGGAGGGGAGACAAGAGAGAGCGATCTAGGCTTGACACTAAGCTTAAACTACGCAACTTCAGAAAGAAAAGATGAAGATAAAGAAAAGACTGGAGAAGAAATGACGATATCGCCATTAATGGAGGAAAACAAGCTTCAGATCAGGACCGAATTGCCTGGAATTACCACCCATGTATCCTCTCCTCCGAACAGAAAAGCGAGGGTTTCTGTTAGAGCAAAATGTGAAGCAGCCACAATGAACGATGGTTGTCAATGGAGAAAATATGGGCAGAAAGTTGCGAAAGGAAACCCCTGTCCTCGAGCCTACTACCGCTGCACAGCAGCTCCGGGATGTCCAGTTAGAAAACAGGTGCAAAGATGCTTGGAAGACATGTCCATTCTGATAACAACGTACGAAGGAAATCATAATCATCCCCTTCCAGTTGGTGCAACAGCCATGGCCTCCACAGCTTCTGCAGCTGCTTCATTTACCTTATTGGACGCACCAGAAGCTTCTGCTTTCAACTCATCTTCTCAATCTTCAAAACCCTTCAACGGCGTCATTTCCGACGAGCCATGTCCTGGAAGCTTTTTGGATCTCACAAAAAATTTGTATGATTCCTCACATTTCCCATCAAATTCAGTGCAATTTCCGGGTTTTAGTTGGGTTCAAGGCAAACCAAGTTACCTCAATGGAAGTTTTATGGGCAATAATCCACTTCCTAGCTTCAGAAATGTGGATCAAAAGGCATTAAAAGAAGGGGGAAATCAATCACTGGCCGAAAATCTTTCCACCGTCATCGCGTCGGACCCAAAATTTCATGTGGCGGTTGCAGCTGCCATTACCTCCCTTATGAACAAAGAAAGCAATTCAGCTCATCCATTCATAGGAAGTGGTTATGGTCCGAGAGCCGGATCGATCGGCTGGTTTGTCGACTCCGTTGCTTCGAAAGATAAGTCGACAATTCATCGTTTTCCATGA 1185 42.53 MERMKEENIGLRKVVEKIMKDYYDLQMKFSVIQQNSQEQVINPDYHSTVFFLSINFFFDFVIIKDLNQTYFSRPNGGETRESDLGLTLSLNYATSERKDEDKEKTGEEMTISPLMEENKLQIRTELPGITTHVSSPPNRKARVSVRAKCEAATMNDGCQWRKYGQKVAKGNPCPRAYYRCTAAPGCPVRKQVQRCLEDMSILITTYEGNHNHPLPVGATAMASTASAAASFTLLDAPEASAFNSSSQSSKPFNGVISDEPCPGSFLDLTKNLYDSSHFPSNSVQFPGFSWVQGKPSYLNGSFMGNNPLPSFRNVDQKALKEGGNQSLAENLSTVIASDPKFHVAVAAAITSLMNKESNSAHPFIGSGYGPRAGSIGWFVDSVASKDKSTIHRFP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2794043 2795391 - Bpe021163.1 Bpe07g00352 106121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00352 394 Gene3D WRKY domain 139 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe07g00352 394 SUPERFAMILY WRKY DNA-binding domain 148 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe07g00352 394 ProSiteProfiles WRKY domain profile. 149 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe07g00352 394 SMART WRKY_cls 154 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe07g00352 394 Pfam WRKY DNA -binding domain 155 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe07g00352 394 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 360 IPR044810 GO:0003700
Bpe07g00352 394 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 1 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00352 Bpe-Chr7:2794043 Bpe15g00723 Bpe-Chr15:17745681 1.21E-58 dispersed
Bpe05g00402 Bpe-Chr5:18422954 Bpe07g00352 Bpe-Chr7:2794043 2.13E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21619 PF03106 WRKY 1.50E-24 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00352 - - gmx:100820209 342.043