Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00379 ATGGTTTCTTCAGATTCCTCAGAGAAAGGGACAGAACTGTTGGCAGATTCGAAGGCCAATGCATGCTATGCGACTTCATATCAACTAATCAGAAGCACTTCAGATGGTCCTGTGGCAATTCTCTGGGACATTGAAAATTGTCCTGTCCCTAGTGATGTTCGTCCTGAAGATGTTGCTGGGAATATTAGGATGGCATTAAGAGTACACCCTGTGATTAAAGGGGCAGTAATGATGTTCTCTGCATATGGGGACTTTAATGCTTTCCCAAGGCGACTCAGAGAAGGTTGCCAAAGAACCGGGGTGAAACTTGTTGATGTTCCAAATGGTAGGAAAGATGCTGCTGATAAGGCTATTCTGGTCGATATGTTTCTTTTTGCCCTTGATAACCCTCCGCCTTCTTCGATTATGCTTATTTCGGGGGATGTTGATTTTGCTCCGGCACTTCACATACTTGGTCAACGAGGATATACTGTCATTCTTGTCATTCCTTCTGGGGTAGGCGTTTCATCTGCCCTTAGCAATGCTGGAAAGTTTGTGTGGAATTGGTCTAGTGTGGCTCGTGGGGAAGGATTTGCACCCGCCATGAAGGCTGTGATGTCTTCTAGAGGAGCAGGTATGGCTGATGTTTCTGGGTATTTTGCTGGAGTTAATATGAACGACAACTTAGACGGCCAAATGGAAGAAGAAGCTATTGTGTATAGAGGAATCTCACAAAAATACTATAATTCAAGAGATTTCTCAATAGTAACTCAATCTGTCTCTGAGTATAATAGTTCTTCGATAATGCCTTATTTGCCTGCAACCTCAAGATCGCATAGTCTCCCGTCTGGTTTAAACGAGGTATCGAGTTGTCCTATGTCATCAATTGATCAGAACGAATTGACTCGGGTACAACCTGGGGATCTAAATGGTCTAAAGCGCCAGCTGGCAAGGCTGCTAGAACTTTCGGGGGGATGTTTGCCTCTAGATCGGGTGCCTGCAGAGTACCTAAAGGTTTTCGGAAGGCCCCTTTACGTTGCTGAGTATGGTGTATTCAAGCTCATCAATCTTTTCAAGAAAATGGAAGATTTATTATGCGTAGAGAGCAAAGGTCCAAAGAAATTTGTTTATCTTAGAAATTCAAAAGCATACCCAAGTGCACCGCCATTGATACTGGCAAAGAAGGAAAATAAGAAAGGGAAGGGGGTAGTGGAAGAGAATGCAGATGTAGGCTCTTCCGAGGAGTACTCCGATGAAGAAAGAGTGGTTCCGATGGAACTTAGTGGGAGGAATGTTGCAGTGGGGACAAATTATGATGCTAATCTTGAACAGTTCAAACATGAGCTCCAAGAGATTCTTGTAAGCTATTCGTGTCGAATTTTCTTGGGATATTTCGAGGCAATTTACCTGCAACGCTACAAAAAACCGTTAGACTATGCACAATTCGGCGTTTATAAGCTGGAAGAGCTGTTTGAGAAAGTAAGTGATGTTGTTGTGTTGCAGGAAGAAGCAGAGAGCAAGAAGAAGTTTGTGGTGGCATTAGGTGGCTAA 1530 43.53 MVSSDSSEKGTELLADSKANACYATSYQLIRSTSDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPSGVGVSSALSNAGKFVWNWSSVARGEGFAPAMKAVMSSRGAGMADVSGYFAGVNMNDNLDGQMEEEAIVYRGISQKYYNSRDFSIVTQSVSEYNSSSIMPYLPATSRSHSLPSGLNEVSSCPMSSIDQNELTRVQPGDLNGLKRQLARLLELSGGCLPLDRVPAEYLKVFGRPLYVAEYGVFKLINLFKKMEDLLCVESKGPKKFVYLRNSKAYPSAPPLILAKKENKKGKGVVEENADVGSSEEYSDEERVVPMELSGRNVAVGTNYDANLEQFKHELQEILVSYSCRIFLGYFEAIYLQRYKKPLDYAQFGVYKLEELFEKVSDVVVLQEEAESKKKFVVALGG 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3303931 3305460 + Bpe021194.1 Bpe07g00379 106148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00379 509 ProSiteProfiles OST-type HTH domain profile. 301 374 IPR025605 -
Bpe07g00379 509 CDD LOTUS 302 371 - -
Bpe07g00379 509 ProSiteProfiles OST-type HTH domain profile. 434 508 IPR025605 -
Bpe07g00379 509 CDD PIN_limkain_b1_N_like 37 163 - -
Bpe07g00379 509 Pfam OST-HTH/LOTUS domain 302 368 IPR025605 -
Bpe07g00379 509 Pfam OST-HTH/LOTUS domain 435 497 IPR025605 -
Bpe07g00379 509 PANTHER LIMKAIN B LKAP 32 504 IPR024768 GO:0005777|GO:0010468|GO:1903231
Bpe07g00379 509 CDD LOTUS 435 496 - -
Bpe07g00379 509 Pfam NYN domain 37 176 IPR021139 GO:0004540
Bpe07g00379 509 Gene3D - 430 503 IPR041966 -
Bpe07g00379 509 Gene3D - 300 370 IPR041966 -
Bpe07g00379 509 PANTHER - 32 504 - -
Bpe07g00379 509 Gene3D - 31 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00379 - - - tcc:18607949 711.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00379 Bpe-Chr7:3303931 Bpe13g00010 Bpe-Chr13:259717 7.38E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g399 . . . . Bpe07g00379 . . Bma12g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005957 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00379 Bpe_Chr07 FPKM 28.753838 30.295324 2.727541 3.264514 7.458364 7.625864 8.072693 5.083068 5.020378 5.485019