Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00380 ACCATGGCTTCTCCCTCCGCCTATTTTCTCTCGCCCCCTTTATCCTCTTCTCGAGCGAGCATGAGGGTCTTCGCCTCCCCGGCCGTTACGGTGGCAGCGGCGGGGGAGGAGGTTGACCAGGTGAGGCTGGAGCCGAGAGTAGAGGAGAGAGACGGGTACTGGGTGCTGAAGGAGAAGTTCAGAGATGGTATTAATCCTCAGGAAAAGGTGAAAATAGAGAAGGAGCCGATGAAGCTTTTCATGGAAGGTGGGATCGAAGATCTGGCCAAGTTGTCCATGGAAGAAATCGACAAAGCTAAGACTACTAAGGATGATATTGATGTCAGACTCAAATGGCTCGGCCTGTTCCATAGAAGGAAACATCAGTATGGCACATTCATGATGAGGCTGAAGCTACCAAATGGCGTGACAACAAGTCAACAAACGAGATACTTAGCAAGTGTGATCCGAAAATACGGAAAAGAGGGCTGTGCCGATGTGACGACCAGACAAAATTGGCAAATTCGGGGAGTCGTGCTACCGGATGTGCCTGAAATCTTGAAGGGTCTGGTAAAAGTTGGCTTGACGAGCCTGCAGAGCGGGATGGACAATGTTAGGAATCCAGTTGGTAATCCTATCGCCGGAATTGACCCAGACGAAATTGTTGATACCCGGCCGTACACCAATTTGCTGTCCCATTTCATCACTGCCAATTCACTTGGGAATCCTACCATCACTAACTTGCCACGAAAATGGAACGTATGCGTGGTGGGGACTCATGATCTCTTTGAGCATCCTCACATCAATGATCTTGCTTACATGCCTGCCACGAAGAATGGACGGTTTGGATTCAATTTGCTGGTGGGCGGGTTTTTCAGTCCCAAGCGATGTGCAGAGGCAGTTCCACTTGATGCCTGGGTGTCAGGGGATGACGTGATCCCAGTATGCAAGGCTGTCTTGGAGGCTTACAGGGATCTCGGCACTAGAGGGAACCGACAAAGGACGCGGATGATGTGGTTAATCGACGAACTCGGTATTGAAAGATTCAGGGCAGAAGTGGAGAAGAGAATGCCAGGGAAAGAGCTGGAGAGAGGATCATCTGAAGAGCTTATTGAAAAACAATGGGAGAGGAGGGATTATCTAGGAGTGCATCCACAAAAACAAGAAGGTCTCAGCTACATCGGAATACACATTCCCGTCGGCCGAGTCCAAGCAGACGATATGGACGAGCTAGCCCGATTAGCTGATGAATACGGCACAGGTGAGCTAAGGCTCACAGTCGAACAAAACATCATCCTCCCCAACATCCCAAACTCAAAGCTCGAAGCTTTACTAGCTGAGCCTCTCCTAAAGAACCGGTTTTTGCCCGAACCACCTCTTCTGATGAAAGGGCTGGTGGCTTGCACCGGCAACCAGTTTTGCGGGCAGGCGATTATCGAGACGAAGGCAAGGGCATTGCAGGTGACGGAGGAGGTGGAGAGGCTGGTGTCGGTCAAAAGGCCGATTCGAATGCACTGGACGGGGTGTCCAAATACGTGCGGGCAAGTGCAGGTGGCCGATATTGGGTTCATGGGGTGCATGACAAGGGATGCGAATGGGAAGACTTGTGAAGGAGCTGATGTGTTCTTGGGTGGGAGAATTGGGAGTGATTCACATTTAGGGGATGTTTACAAGAAGGGTGTCCCTTGTAAGGACTTGGTGCCATTGGTTGTGGACATTCTGATAAACCACTTCGGAGCTGTTCCTAGAAACAGAGAGGAGGGAGAAGAAGATTAG 1755 50.6 TMASPSAYFLSPPLSSSRASMRVFASPAVTVAAAGEEVDQVRLEPRVEERDGYWVLKEKFRDGINPQEKVKIEKEPMKLFMEGGIEDLAKLSMEEIDKAKTTKDDIDVRLKWLGLFHRRKHQYGTFMMRLKLPNGVTTSQQTRYLASVIRKYGKEGCADVTTRQNWQIRGVVLPDVPEILKGLVKVGLTSLQSGMDNVRNPVGNPIAGIDPDEIVDTRPYTNLLSHFITANSLGNPTITNLPRKWNVCVVGTHDLFEHPHINDLAYMPATKNGRFGFNLLVGGFFSPKRCAEAVPLDAWVSGDDVIPVCKAVLEAYRDLGTRGNRQRTRMMWLIDELGIERFRAEVEKRMPGKELERGSSEELIEKQWERRDYLGVHPQKQEGLSYIGIHIPVGRVQADDMDELARLADEYGTGELRLTVEQNIILPNIPNSKLEALLAEPLLKNRFLPEPPLLMKGLVACTGNQFCGQAIIETKARALQVTEEVERLVSVKRPIRMHWTGCPNTCGQVQVADIGFMGCMTRDANGKTCEGADVFLGGRIGSDSHLGDVYKKGVPCKDLVPLVVDILINHFGAVPRNREEGEED 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3307890 3310261 + Bpe021195.1 Bpe07g00380 106149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00380 584 PRINTS Sirohaem Fe-binding site signature 456 474 IPR006066 GO:0016491|GO:0020037|GO:0051536
Bpe07g00380 584 PRINTS Sirohaem Fe-binding site signature 500 518 IPR006066 GO:0016491|GO:0020037|GO:0051536
Bpe07g00380 584 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 10 582 - -
Bpe07g00380 584 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 456 567 IPR045854 -
Bpe07g00380 584 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 10 582 - -
Bpe07g00380 584 Pfam Nitrite and sulphite reductase 4Fe-4S domain 195 351 IPR006067 GO:0016491|GO:0020037|GO:0051536
Bpe07g00380 584 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 43 194 IPR036136 GO:0016491
Bpe07g00380 584 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 120 184 IPR005117 GO:0016491
Bpe07g00380 584 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 377 440 IPR005117 GO:0016491
Bpe07g00380 584 Gene3D - 63 444 - -
Bpe07g00380 584 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 331 467 IPR036136 GO:0016491
Bpe07g00380 584 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 195 353 IPR045854 -
Bpe07g00380 584 Gene3D Sulfite Reductase Hemoprotein, domain 1 187 372 IPR045854 -
Bpe07g00380 584 Gene3D Sulfite Reductase Hemoprotein, domain 1 452 582 IPR045854 -
Bpe07g00380 584 Pfam Nitrite and sulphite reductase 4Fe-4S domain 459 567 IPR006067 GO:0016491|GO:0020037|GO:0051536
Bpe07g00380 584 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 500 516 IPR006066 GO:0016491|GO:0020037|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00380 K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] - mnt:21410142 1002.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00380 Bpe-Chr7:3307890 Bpe08g00279 Bpe-Chr8:1657307 7.52E-24 dispersed
Bpe07g00380 Bpe-Chr7:3307890 Bpe01g00321 Bpe-Chr1:1979572 3.02E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g409 . Blo15g00744 Bda06g01068 . Bpe07g00380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1177 Cone10ag0984 . . . . . . . . . . . . . . . . . . . Cpe14g00297 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011811 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00380 Bpe_Chr07 FPKM 3.236559 4.2312 0.0 0.0 4.974888 0.0 3.071152 0.0 0.0 0.0