Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00392 TTAGGAAAAGCTCTTGCCCTAGCTCTTGGAAATAAAGGAATATTTGTAACTGTAGTTGATTTCTCTGAAGAAAAAGGAAGGGAAGTTGCTTCTTGCATTGAAGAAAAGCATATAGAGTTCCATTCGAAGTTAGAATTCCCATGTGCTTTGTTCATAAAATGCGATGTAACAAACTCAAGAGATCTAGCACATGCTTTTGAAAGGCATTTGGCAACATATGGAGGATTGGATATATGTATTAACTGTGCAGGAATTGGCAGTGAAATACCATTCCATAAGGACCAAACAGATGGGAGTCAAACATGGAGACGCACTATTGACGTCAATCTGACTGGAGTTATTGAGTGCACTCGCCTTGCGATAAAAGCCATGCAATCTGTTAAAAAAACTGGGGTGATTATCAATTTGGGTTCTGCTTCTGGTCTTTATCCAATGTATTTCGACCCTATCTATTCCGCTTCCAAAGGAGGCATTGTTATGTTTACTAGATCCCTTGTTCTTTTCAAACGTCAAGGTATTCGCATCAATGTTCTTTGCCCTGAGTTTGTGGAAACTGACATGGGTTCTAAGATTGACCCCAAATTTGTGAAACTAATGGGCGGCTTTCTTTCGATGGAAATGGTGATCAAAGGTGCTTTTGAGTTAATTACGGATAAGAGCAAAGCTGGTGCATGCCTCTGGATTACAAATCGTCGGGGCATGGAGTACTGGCCAACACCCATGGAAGAAAAGAAATACATGCTTCCTTCTGCTGGTTTGAGGAAGAAATCTGTATCCAAAATTTTTCCAAATATTCAACTTCCAGAATGTTATGAAAAAATAGTTGTTCACACTCTGAGTCACAATTTTCGTAATGCAACTAACATAGTGCGGAGTCCATTGAGATTGCCAATTGAACCACATCATGTTCTTCTTAAAATTATATACGCTGGTGTAAATGCTAGTGATGTAAATTTTAGCTCTGGTCGGTATTTCAGCGGTGGCAAGGATGCTGGGTCCCATCTTCCATTTAATGCTGGTTTTGAGGGAGTGGGAATAATTGCAGCAGTAGGCGATTCTGTCTTTGGTCTACAAATTGGTTCTCCGGCTGCAATGATGACATTTGGAAGTTATGCAGAATTCGTTATGGTCCCTTCAAAACACATACTTCCTGTTGCGAGACCAGATCCAGAAGTTGTTGCGATGCTAACGTCAGGGTTGACAGCATCAATTGCCCTGGAAAAGGCAGGGGATATGGAAAGGGGAAAAGTAGTTCTTGTAACTGCTGCTGCTGGAGGGACTGGCCAGTTTGCCGTTCAGCTGGCTAAATTAGCTGGAAATAAGGTTGTTGCAACTTGTGGAGGTAAAGAGAAGGCCAATCTTTTAAAAGATTTGGGAGTGGATCGAGTTATAGATTATAGAGCTGAAAATATCAAAGAAGTTCTGAAAAAGGAGTATCCCAAGGGTGTTGACATCATCTATGAGTCTGTTGGTGGTGACATGTTCGATTTGTGCTTAAATGCTCTGGCTGTCTATGGACGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAACATGGATGGAAACCTCTGAATTACACGGGACTGTGCGAGAAACTTTTGTCCAAAAGTCAAACTGTAGCTGGATTTTTCCTAGTGCAATATAGTCATCTATGGCAACAACATTTGGACAAACTAATTGATCTCTACTCCTCGGGACGTCTAAAGGTCTCAATTGATCCCAAAAGATTTTTGGGTCTCAATGCGGTCGCAGATGCAGTTGAGTATCTCCATTCCGGTAAAAGTGTTGGGAAGGTGGTTGTATGCATCGATCCGACCTACAGCAACCAAGTGGCAAAACTTTGA 1851 41.44 LGKALALALGNKGIFVTVVDFSEEKGREVASCIEEKHIEFHSKLEFPCALFIKCDVTNSRDLAHAFERHLATYGGLDICINCAGIGSEIPFHKDQTDGSQTWRRTIDVNLTGVIECTRLAIKAMQSVKKTGVIINLGSASGLYPMYFDPIYSASKGGIVMFTRSLVLFKRQGIRINVLCPEFVETDMGSKIDPKFVKLMGGFLSMEMVIKGAFELITDKSKAGACLWITNRRGMEYWPTPMEEKKYMLPSAGLRKKSVSKIFPNIQLPECYEKIVVHTLSHNFRNATNIVRSPLRLPIEPHHVLLKIIYAGVNASDVNFSSGRYFSGGKDAGSHLPFNAGFEGVGIIAAVGDSVFGLQIGSPAAMMTFGSYAEFVMVPSKHILPVARPDPEVVAMLTSGLTASIALEKAGDMERGKVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKEKANLLKDLGVDRVIDYRAENIKEVLKKEYPKGVDIIYESVGGDMFDLCLNALAVYGRLIVIGMISQYQGEHGWKPLNYTGLCEKLLSKSQTVAGFFLVQYSHLWQQHLDKLIDLYSSGRLKVSIDPKRFLGLNAVADAVEYLHSGKSVGKVVVCIDPTYSNQVAKL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3542153 3571337 + Bpe021208.1 Bpe07g00392 106161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00392 616 Pfam short chain dehydrogenase 1 192 IPR002347 -
Bpe07g00392 616 Pfam Zinc-binding dehydrogenase 426 560 IPR013149 -
Bpe07g00392 616 Gene3D - 1 248 - -
Bpe07g00392 616 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 415 436 IPR002364 GO:0008270|GO:0016491
Bpe07g00392 616 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 IPR002347 -
Bpe07g00392 616 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 IPR002347 -
Bpe07g00392 616 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 IPR002347 -
Bpe07g00392 616 SMART PKS_ER_names_mod 281 603 IPR020843 GO:0016491
Bpe07g00392 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 391 569 IPR036291 -
Bpe07g00392 616 SUPERFAMILY GroES-like 289 419 IPR011032 -
Bpe07g00392 616 PRINTS Glucose/ribitol dehydrogenase family signature 151 170 IPR002347 -
Bpe07g00392 616 PRINTS Glucose/ribitol dehydrogenase family signature 74 85 IPR002347 -
Bpe07g00392 616 PRINTS Glucose/ribitol dehydrogenase family signature 125 141 IPR002347 -
Bpe07g00392 616 PRINTS Glucose/ribitol dehydrogenase family signature 171 188 IPR002347 -
Bpe07g00392 616 Gene3D - 276 603 - -
Bpe07g00392 616 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 79 614 - -
Bpe07g00392 616 Gene3D - 394 572 - -
Bpe07g00392 616 CDD Mgc45594_like 271 604 - -
Bpe07g00392 616 Pfam Alcohol dehydrogenase GroES-like domain 300 365 IPR013154 -
Bpe07g00392 616 PANTHER BNAA08G02470D PROTEIN 79 614 - -
Bpe07g00392 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 235 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00392 - - - zju:107427080 981.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00392 Bpe-Chr7:3542153 Bpe12g00359 Bpe-Chr12:8769541 2.27E-27 dispersed
Bpe08g01343 Bpe-Chr8:14585112 Bpe07g00392 Bpe-Chr7:3542153 4.77E-12 dispersed
Bpe13g00515 Bpe-Chr13:12491394 Bpe07g00392 Bpe-Chr7:3542153 9.48E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00392 Bpe_Chr07 FPKM 4.778343 5.609735 8.657351 9.064543 12.737454 12.859059 12.870392 16.044813 16.734297 15.923443