Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00414 ATGGATTTGCTGTCTCTAAGGGAGCATCATGCCAGAACGCTACTAATTCATTATCGTTGGGATGTGGAGAATTTGTTTGCTGTGCTTGTTGAGAAAGGAAAATCCTCCTTATTCGCCGCAGCTGGTGTTCGTGTGTCTGAGCACCCAAATCTTGATGCATCAGCCCCTACTTCTGCTCTGACCTGTGGTGTCTGCATGGAGGAACTAGACAGTAAGAAAGCAACAGTGATGGATTGTGGCCATTGCTTCTGCAACGACTGTTGGACAGAGCATTTTGTCGTTAAAATAAACGAAGGTCAAAGTCGGCGCATCAGATGTATGTCATACAAGTGCAATGCTATCTGTGATGAGTCTGCGGTTAGAAGCCTAGTAAGTCAAAGGCACCCAGACCTTGCAGATAAATTTGATCGCTTTCTTCTTGAGTCGTATATTGAGGATAATAAAAGAGTTAAGTGGTGCCCAAGTACTCCTAATTGTGGTAATGCAATAAGAGTAGAGGATGATGAATTCTGTGAGGTAGAATGTTCGTGTGGTCTACAATTTTGTTTTAGCTGCTCATCAGAAGCACATTCACCATGTTCATGTTTGATGTGGGAACTGTGGACAAAGAAATGTCGTGATGAATCTGAAACAGTTAATTGGATTACTGTTCATACAAAGCCTTGCCCGAAATGTCACAAACCCGTGGAGAAGAATGGTGGGTGCAATCTTGTTAGCTGCATTTGCGGTCAAGCATTTTGTTGGCTGTGCGGTGGAGCCACTGGTCGGGACCATACGTGGTCCAGCATTTCTGGTCACAGTTGTGGTCGTTATAAAGAGGAAACAGAAAAAAAAGCACAACAGGCAAAGAGAGATCTGTATCGCTATATGCACTATCATAACCGATACAAAGCACATACTGATTCTTTCAAGTTTGAAATTAAATTGAGGGAGACTATACAACAGAGGATATCAATTTCTGAGGAGAAGGAATTCATGCTTCGGGATTTCACTTGGGTAAATAATGGACTCCACAGACTCTTTCGATCTAGACGAGTCCTCTCATACTCATACCCATTTGCATTTTATATGTTTGGTGATGAGCTTTTCAAGGATGAGATGACAAACGAGGTACGTGAAATCAAACAGAATTTATTTGAGGACCAGCAACAGCAGCTTGAAGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAAGAGCCCTTTGACCAATATTCCGAAGATCGGGTAATGGAGACAAGGATGCAAGTTATCAATTTGTCAGTAATAACGGATACCCTTTGTAAGAAAATGTATGACTGCATCGAGAATGACTTATTGGGTTCTGTCAACCTTGGTAATCACAATATTGCCCCATACAAGTCAAAAGGAATCGAGAAGGCATTGGATTTTTCTGATAGCACAAATAAGGCTGATAAACACCTAGCATCGGGCTGTGGCACTAGTGGTAGAATAGATGGAGGAACATCAGAACTTGATAGACCCTCGGGCTCTGGCAATTCAGATGACGGCGGGTACTCTTCTCGGAAGCGTGCCAAAAAGGGTAGTGTTGGAGGCAGTTTTTTTGATCTGAACTTGCCTGCAGAGGTGGTCGACCGAAATTGA 1602 42.82 MDLLSLREHHARTLLIHYRWDVENLFAVLVEKGKSSLFAAAGVRVSEHPNLDASAPTSALTCGVCMEELDSKKATVMDCGHCFCNDCWTEHFVVKINEGQSRRIRCMSYKCNAICDESAVRSLVSQRHPDLADKFDRFLLESYIEDNKRVKWCPSTPNCGNAIRVEDDEFCEVECSCGLQFCFSCSSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEETEKKAQQAKRDLYRYMHYHNRYKAHTDSFKFEIKLRETIQQRISISEEKEFMLRDFTWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTNEVREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQYSEDRVMETRMQVINLSVITDTLCKKMYDCIENDLLGSVNLGNHNIAPYKSKGIEKALDFSDSTNKADKHLASGCGTSGRIDGGTSELDRPSGSGNSDDGGYSSRKRAKKGSVGGSFFDLNLPAEVVDRN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4176421 4181934 - Bpe021236.1 Bpe07g00414 106183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00414 533 Pfam Ariadne domain 272 533 IPR045840 -
Bpe07g00414 533 Pfam IBR domain, a half RING-finger domain 134 195 IPR002867 -
Bpe07g00414 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 147 IPR013083 -
Bpe07g00414 533 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 459 - -
Bpe07g00414 533 Gene3D - 191 439 - -
Bpe07g00414 533 SUPERFAMILY RING/U-box 203 269 - -
Bpe07g00414 533 MobiDBLite consensus disorder prediction 474 533 - -
Bpe07g00414 533 SUPERFAMILY RING/U-box 133 201 - -
Bpe07g00414 533 SUPERFAMILY RING/U-box 58 145 - -
Bpe07g00414 533 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 459 IPR031127 GO:0004842|GO:0016567
Bpe07g00414 533 ProSiteProfiles TRIAD supradomain profile. 58 272 IPR044066 -
Bpe07g00414 533 Coils Coil 364 384 - -
Bpe07g00414 533 ProSiteProfiles Zinc finger RING-type profile. 62 106 IPR001841 -
Bpe07g00414 533 SMART ibrneu5 203 268 IPR002867 -
Bpe07g00414 533 SMART ibrneu5 133 195 IPR002867 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00414 Bpe-Chr7:4176421 Bpe14g00030 Bpe-Chr14:495938 3.39E-20 dispersed
Bpe07g00414 Bpe-Chr7:4176421 Bpe01g00171 Bpe-Chr1:1021489 2.00E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00414 K11968 - csv:101205066 903.279