Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00414 ATGGATTTGCTGTCTCTAAGGGAGCATCATGCCAGAACGCTACTAATTCATTATCGTTGGGATGTGGAGAATTTGTTTGCTGTGCTTGTTGAGAAAGGAAAATCCTCCTTATTCGCCGCAGCTGGTGTTCGTGTGTCTGAGCACCCAAATCTTGATGCATCAGCCCCTACTTCTGCTCTGACCTGTGGTGTCTGCATGGAGGAACTAGACAGTAAGAAAGCAACAGTGATGGATTGTGGCCATTGCTTCTGCAACGACTGTTGGACAGAGCATTTTGTCGTTAAAATAAACGAAGGTCAAAGTCGGCGCATCAGATGTATGTCATACAAGTGCAATGCTATCTGTGATGAGTCTGCGGTTAGAAGCCTAGTAAGTCAAAGGCACCCAGACCTTGCAGATAAATTTGATCGCTTTCTTCTTGAGTCGTATATTGAGGATAATAAAAGAGTTAAGTGGTGCCCAAGTACTCCTAATTGTGGTAATGCAATAAGAGTAGAGGATGATGAATTCTGTGAGGTAGAATGTTCGTGTGGTCTACAATTTTGTTTTAGCTGCTCATCAGAAGCACATTCACCATGTTCATGTTTGATGTGGGAACTGTGGACAAAGAAATGTCGTGATGAATCTGAAACAGTTAATTGGATTACTGTTCATACAAAGCCTTGCCCGAAATGTCACAAACCCGTGGAGAAGAATGGTGGGTGCAATCTTGTTAGCTGCATTTGCGGTCAAGCATTTTGTTGGCTGTGCGGTGGAGCCACTGGTCGGGACCATACGTGGTCCAGCATTTCTGGTCACAGTTGTGGTCGTTATAAAGAGGAAACAGAAAAAAAAGCACAACAGGCAAAGAGAGATCTGTATCGCTATATGCACTATCATAACCGATACAAAGCACATACTGATTCTTTCAAGTTTGAAATTAAATTGAGGGAGACTATACAACAGAGGATATCAATTTCTGAGGAGAAGGAATTCATGCTTCGGGATTTCACTTGGGTAAATAATGGACTCCACAGACTCTTTCGATCTAGACGAGTCCTCTCATACTCATACCCATTTGCATTTTATATGTTTGGTGATGAGCTTTTCAAGGATGAGATGACAAACGAGGTACGTGAAATCAAACAGAATTTATTTGAGGACCAGCAACAGCAGCTTGAAGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAAGAGCCCTTTGACCAATATTCCGAAGATCGGGTAATGGAGACAAGGATGCAAGTTATCAATTTGTCAGTAATAACGGATACCCTTTGTAAGAAAATGTATGACTGCATCGAGAATGACTTATTGGGTTCTGTCAACCTTGGTAATCACAATATTGCCCCATACAAGTCAAAAGGAATCGAGAAGGCATTGGATTTTTCTGATAGCACAAATAAGGCTGATAAACACCTAGCATCGGGCTGTGGCACTAGTGGTAGAATAGATGGAGGAACATCAGAACTTGATAGACCCTCGGGCTCTGGCAATTCAGATGACGGCGGGTACTCTTCTCGGAAGCGTGCCAAAAAGGGTAGTGTTGGAGGCAGTTTTTTTGATCTGAACTTGCCTGCAGAGGTGGTCGACCGAAATTGA 1602 42.82 MDLLSLREHHARTLLIHYRWDVENLFAVLVEKGKSSLFAAAGVRVSEHPNLDASAPTSALTCGVCMEELDSKKATVMDCGHCFCNDCWTEHFVVKINEGQSRRIRCMSYKCNAICDESAVRSLVSQRHPDLADKFDRFLLESYIEDNKRVKWCPSTPNCGNAIRVEDDEFCEVECSCGLQFCFSCSSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEETEKKAQQAKRDLYRYMHYHNRYKAHTDSFKFEIKLRETIQQRISISEEKEFMLRDFTWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTNEVREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQYSEDRVMETRMQVINLSVITDTLCKKMYDCIENDLLGSVNLGNHNIAPYKSKGIEKALDFSDSTNKADKHLASGCGTSGRIDGGTSELDRPSGSGNSDDGGYSSRKRAKKGSVGGSFFDLNLPAEVVDRN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4176421 4181934 - Bpe021236.1 Bpe07g00414 106183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00414 533 Pfam Ariadne domain 272 533 IPR045840 -
Bpe07g00414 533 Pfam IBR domain, a half RING-finger domain 134 195 IPR002867 -
Bpe07g00414 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 147 IPR013083 -
Bpe07g00414 533 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 459 - -
Bpe07g00414 533 Gene3D - 191 439 - -
Bpe07g00414 533 SUPERFAMILY RING/U-box 203 269 - -
Bpe07g00414 533 MobiDBLite consensus disorder prediction 474 533 - -
Bpe07g00414 533 SUPERFAMILY RING/U-box 133 201 - -
Bpe07g00414 533 SUPERFAMILY RING/U-box 58 145 - -
Bpe07g00414 533 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 459 IPR031127 GO:0004842|GO:0016567
Bpe07g00414 533 ProSiteProfiles TRIAD supradomain profile. 58 272 IPR044066 -
Bpe07g00414 533 Coils Coil 364 384 - -
Bpe07g00414 533 ProSiteProfiles Zinc finger RING-type profile. 62 106 IPR001841 -
Bpe07g00414 533 SMART ibrneu5 203 268 IPR002867 -
Bpe07g00414 533 SMART ibrneu5 133 195 IPR002867 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00414 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00414 Bpe-Chr7:4176421 Bpe14g00030 Bpe-Chr14:495938 3.39E-20 dispersed
Bpe07g00414 Bpe-Chr7:4176421 Bpe01g00171 Bpe-Chr1:1021489 2.00E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g544 . . . . Bpe07g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1137 Cone10ag1148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00414 . 107 533 ARIADNE family AT4G34370 70.0 1.7e-174 609.0
Bpe07g00414 . 1 483 ARIADNE family AT2G16090 73.9 2.2e-218 755.0
Bpe07g00414 . 1 482 ARIADNE family AT3G27710 61.0 4.7e-174 607.8
Bpe07g00414 . 1 466 ARIADNE family AT3G27720 52.1 2.7e-136 482.3
Bpe14g00030 . 9 636 ARIADNE family AT1G05890 54.2 2.9e-201 698.4
Bpe05g00982 . 58 572 ARIADNE family AT1G05890 63.2 6.4e-188 654.1
Bpe14g00030 . 18 640 ARIADNE family AT1G65430 65.6 6.0e-236 813.5
Bpe05g00982 . 17 625 ARIADNE family AT1G65430 59.3 3.5e-204 708.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00414 Bpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0