Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00416 ATGGGATCTATTTGTTGTGTTGCTGCTAAAGATATGAGTCATAGGACTATCAGAAATGTAGCAACTGATAATCCACCCAGTAATAATCGTTATTCGCCAAGTTTGAGCTTTCGATGGGATAATCGTGGCCGGGTGGCTGGCGAAGAGACTTCTATTCACTGGTTTTCAGATGGAATGAGCTGCAGTGATAGATCAAAAATCAAGTGTAATGCTGAATTTGCATCTGGTGAAGAAAGTTCACTGGAAAATACCCGGCACAGCTGGTTAAAGTCTCCATCCTCAGAAGGAAGTGCACAATCGTTAAGAACTCATGCTCCGGTTCGATCCATTTCAAAAAATATTTCTGCGGATCCGAGTTTGGAACAGGTGAAGGAGCCAGAAGAATCAGGCAGAGACCCCTACCCCTCTCCTGCCAAGCTCTCTCATTCATTCCCTGCAACATCGTCATCCTCAGCTTCCCCTTTGTCTTTTCAAAGTAGCTTACCTCGCAATGTCTCCAATGTCTCAAAGCCATTAAGATGGACCCACCATTCTCCGAATTCAGCAACCCAGCAGTTACGTCAAGTGTATGATAACCAAAATTCAGGATTCAAGTCGCCAACTAGCTACTCGATCACAGAGGATAGAAGATTCCCATCTTGGAGCAACGAGTTCATTGGGGACGTAGATGAAGGGTCGCCAACCGGTTGGTCGATGGAGGGTCTCTCTGAGATGATAGCTTCTTCAGAGAGGAGACGTTGGTCTTTTGACAGTGAGTCGTCTGGGTTTAATTGTGAGAAGATGGGCAGAGCAAGAAATCCATATTCTTCTTCTTCCTCCGTTGAGTTGAAAACATGTGGTGTTTGCTCCGAATTATTGGCTGAAAGGCCACCATGGATCAACAACAAGAATATCGTTAATGATATTTCTGTGGTGGCAGTGCTAACTTGTGGGCATGTTTATCATGCTGAGTGCTTGGAGCGTTTGACACCTGAAAGTAGTAAGTATGAACCAAGCTGCCCTGTTTGTAATGTTGGTAAAAAGCAGGGCCTTAAGTTGAAAGAAAAGATACTAAAATCCTCCAGTTTTCGTTTGAGGAGTTCCTTGGGAAGGCCTTTCTTAAGAAAGAATTTTTCGTTTGGTTCAAATAGGCCATTCTCAATGTCGCATAATCAAATGAGAAAGAAAGGTTTCTTCTGGATCAAATCAACTAAAACATAA 1200 43.33 MGSICCVAAKDMSHRTIRNVATDNPPSNNRYSPSLSFRWDNRGRVAGEETSIHWFSDGMSCSDRSKIKCNAEFASGEESSLENTRHSWLKSPSSEGSAQSLRTHAPVRSISKNISADPSLEQVKEPEESGRDPYPSPAKLSHSFPATSSSSASPLSFQSSLPRNVSNVSKPLRWTHHSPNSATQQLRQVYDNQNSGFKSPTSYSITEDRRFPSWSNEFIGDVDEGSPTGWSMEGLSEMIASSERRRWSFDSESSGFNCEKMGRARNPYSSSSSVELKTCGVCSELLAERPPWINNKNIVNDISVVAVLTCGHVYHAECLERLTPESSKYEPSCPVCNVGKKQGLKLKEKILKSSSFRLRSSLGRPFLRKNFSFGSNRPFSMSHNQMRKKGFFWIKSTKT 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4242597 4244292 - Bpe021238.1 Bpe07g00416 106185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00416 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Bpe07g00416 399 SMART ring_2 279 336 IPR001841 -
Bpe07g00416 399 SUPERFAMILY RING/U-box 278 338 - -
Bpe07g00416 399 PANTHER BNAA09G43140D PROTEIN 1 353 - -
Bpe07g00416 399 ProSiteProfiles Zinc finger RING-type profile. 279 337 IPR001841 -
Bpe07g00416 399 MobiDBLite consensus disorder prediction 80 118 - -
Bpe07g00416 399 PANTHER EXPRESSED PROTEIN 1 353 - -
Bpe07g00416 399 MobiDBLite consensus disorder prediction 80 162 - -
Bpe07g00416 399 MobiDBLite consensus disorder prediction 141 162 - -
Bpe07g00416 399 CDD RING-H2 279 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00416 - - - bhj:120088479 353.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00662 Bpe-Chr6:17336855 Bpe07g00416 Bpe-Chr7:4242597 9.80E-07 dispersed
Bpe07g00416 Bpe-Chr7:4242597 Bpe12g00085 Bpe-Chr12:626086 2.08E-86 dispersed
Bpe07g00416 Bpe-Chr7:4242597 Bpe15g00857 Bpe-Chr15:18549295 1.83E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g344 . . . . Bpe07g00416 . . Bma12g00499 . . Cma02g00378 Cma20g00829 Car02g00245 Car20g00714 Sed05g2310 . . Bhi05g01247 Tan02g0782 Cmetu01g1358 . . . . . . . . . . . . . . . Lsi10g00395 . Chy11g00356 . Blo04g00522 . Bda15g00059 . . . . . Sed01g0284 Cmo02g00384 . . . . . Cpe16g00260 Cpe05g01277 Bhi10g01975 Tan05g1268 Cmetu11g0620 . Hepe08g0995 . . . . . . . . . . Csa02g01285 . Cme11g00139
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00416 Bpe_Chr07 FPKM 23.259649 25.156832 22.63616 18.114836 35.2085 38.819756 33.083916 24.864201 24.771179 27.583792