Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00424 ATGGAAAGGTCGATCTCACCGTCAGAACAACTTGAGCGCCTTGCCGAGTCGGAAGAAGAAATACGGTATCTGCAAGAAATATTGGACAACATTCGATTCATAGAAGAACAAATGAAGGAAATATCTGAATTTCCTACTAAAATTGCGACTGTTCACAACAGGATAGACGCCATGATCCCGATTCCAGAGCTGATGAATCGAGTAGAGACCTTCGAGTCCCGACAAGAAAAAGGAAATGGAGTTGAAATGCGGGAAAGTCCCACATACAATATATCACCAAGAGAAGGTTACGAAGCACCAAGAAGTGCTAGCAACCAACGACCAACAAATAGGTCTATATCATGTTTTCTGTGCATGGGAACCCATCGAGTAGCTGAGTGTCCGCATAGATTGGCCCTAACTGCCTTACAAGCTTCGATTCATGATGACAACTCGGTTAAAGAAGTTTTCGAAAAAGAAGCCACTGAACTTGCAGAAATTGGGACTATGACATTCTTGTCAGCAGTACAACAACAGATAAAAGAGCTGAAGAAGACCCAAGATAAAGGTCTTATGTATGTAGAGTCATTCATTAATAATAAGTCTACTAAGAGTACGATGATAGACTCGAGAGCTACTCATAACTTCATTATGGAGAAAGGAGCTCACCGTCTCGGTCTGAAGCTAGAAAAGAATGATGGTAGGATGAAAACGGTGAATGCAAAAGCGATGTCGGTACTCGAGGTCGTAAAGAGAGTCCAGTTGAAACTCAGCTCATGGACAGGATTCATTGATTTTGTCGTAGCACAGATGGATGACTTTGACACCATCTTGGGGGTGGAATTCCTGATAAAACATAAAGTTATATCAATGCCTTCAGCAAAATGTTTAGTTATGACAAGTAACAACTCAACAGTTGTTACTGCGATTCTTAAACAACCAGATGCCAACAACATAAAGACGATCTCTGCTATGCAATTCAAGAAAGGGCTGAAGCACAATGATTCAACTTATATGATTGTTTCGTTGGAGATAAGTTACTACTGGCCCCAAATGAAGGGTGATGTTATGCGATACCACACCTTAGAACAACCTTATTCTGGAAAAAGCCCGAAGGCATACAATTTCTCTAAAGAATGGAAGCACAATGCAGAGATAACTCGCCCTGGTGATCTCTATGATCATGGAAGTCTGGTGAAAGCGATTAAACAGGTGGATGTTGTTATATCGACGGTCGGTCATGCTCAGATAGGCGATCAAGATAAACTCATCGACGCCATCAAAGAAGCTGGCAACGTCAAGAGGTTTCTTCCGTCAGAGTTTGGGAACGACGCGGATCGCGTCCATGCAGTGGAGCCGGCGAAAACGGCATTTGAAGCTAAAGTTAAAGTCCGGCGAGCTATTGAAGCGGAGGGAATTCCTTACACCATTGTTTCTTCCAACTTATTTGCAGGTTACTTTATTCCCAATCTCTCTCAGCCGGAAGCTAGTTCTCCACCAAGAGACAAACTTGTTTTATTAGGAAATGGAACCCCGAAAGCAATTTTCAACAAGGAAGAAGACATAGCAGCCTATACTATCAGAGCTGTGGACGATCCAAGAACTCTGAACAAAATACTCTACATCAGACCCCCTCGTAACATATACTCATTGAATGATCTTGTTTCCCTCTGGGACAAAAAAATTGGCCATCCCGTTGAAAGGGTATATGTTCCAGAGGATCAAGTTTTGAACAACATTCAAGAGGCCCCTTTTCCTCATGATGTGATCCTGGCTATCGCACACTCCGTTCTTGTTGAGGGAGACCAAACCAACTTCGATATCGAACCGTGGTTCGGGGTCGAGGCTTCGGTGCTTTATCCCGATGTTAAATACACATCCGTGGACGAGTACCTTGATCAATTTGTCTGA 1890 42.91 MERSISPSEQLERLAESEEEIRYLQEILDNIRFIEEQMKEISEFPTKIATVHNRIDAMIPIPELMNRVETFESRQEKGNGVEMRESPTYNISPREGYEAPRSASNQRPTNRSISCFLCMGTHRVAECPHRLALTALQASIHDDNSVKEVFEKEATELAEIGTMTFLSAVQQQIKELKKTQDKGLMYVESFINNKSTKSTMIDSRATHNFIMEKGAHRLGLKLEKNDGRMKTVNAKAMSVLEVVKRVQLKLSSWTGFIDFVVAQMDDFDTILGVEFLIKHKVISMPSAKCLVMTSNNSTVVTAILKQPDANNIKTISAMQFKKGLKHNDSTYMIVSLEISYYWPQMKGDVMRYHTLEQPYSGKSPKAYNFSKEWKHNAEITRPGDLYDHGSLVKAIKQVDVVISTVGHAQIGDQDKLIDAIKEAGNVKRFLPSEFGNDADRVHAVEPAKTAFEAKVKVRRAIEAEGIPYTIVSSNLFAGYFIPNLSQPEASSPPRDKLVLLGNGTPKAIFNKEEDIAAYTIRAVDDPRTLNKILYIRPPRNIYSLNDLVSLWDKKIGHPVERVYVPEDQVLNNIQEAPFPHDVILAIAHSVLVEGDQTNFDIEPWFGVEASVLYPDVKYTSVDEYLDQFV 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4746965 4761493 - Bpe021248.1 Bpe07g00424 106193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00424 629 Gene3D - 473 626 - -
Bpe07g00424 629 Pfam NmrA-like family 378 560 IPR008030 -
Bpe07g00424 629 Gene3D Acid Proteases 167 303 IPR021109 -
Bpe07g00424 629 CDD retropepsin_like 190 276 - -
Bpe07g00424 629 CDD PCBER_SDR_a 379 624 IPR045312 GO:0016491
Bpe07g00424 629 PANTHER PINORESINOL REDUCTASE-RELATED 366 629 - -
Bpe07g00424 629 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 379 596 IPR036291 -
Bpe07g00424 629 Gene3D - 362 613 - -
Bpe07g00424 629 Pfam Retroviral aspartyl protease 183 291 - -
Bpe07g00424 629 MobiDBLite consensus disorder prediction 75 108 - -
Bpe07g00424 629 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 366 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00424 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - ming:122072712 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00277 Bpe-Chr6:13728754 Bpe07g00424 Bpe-Chr7:4746965 2.09E-88 dispersed
Bpe07g00424 Bpe-Chr7:4746965 Bpe11g00301 Bpe-Chr11:2203922 8.77E-72 dispersed
Bpe05g00154 Bpe-Chr5:4549760 Bpe07g00424 Bpe-Chr7:4746965 1.10E-09 transposed
Bpe15g00059 Bpe-Chr15:7229894 Bpe07g00424 Bpe-Chr7:4746965 8.61E-08 transposed
Bpe05g00329 Bpe-Chr5:17095917 Bpe07g00424 Bpe-Chr7:4746965 1.53E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g368 . . . Bda08g00941 Bpe07g00424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g00373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000006 2 55 1 5 3 7 1 19 23 1 28 10 23 1 39 61 9 1 0 16 4 70 1 20 0 1 2 11 4 1 419
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00424 Bpe_Chr07 FPKM 26.48148 29.758268 12.135339 12.555717 8.270629 7.809815 6.64011 3.699194 4.157102 3.849852