Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00425 ATGAATGATCTTATGACCAAATCATTTCTGAGCTATGTAGAACTAAAGAAACAAGCAATGAAGGATTTGGAAGCTGGGCCAGACATCGAGATGGGGAAGCTTGACCCTGCAGATGAACAAAATCTCTCGCACTTTTTTGAAGAAGTTGCTGTGATCAAAGCAAGCATGGAAGAGATCACTAATCTTCTCTTCGACCTTCAAAACCTGAACGAAGAGGCTAAATCCATTTACAATGCCAACGTTCTTAGTGGAGTCCGAGAAAAAATCAACTCAGACATGGTTGAGGTTCTTCGAAAGGCGAAAAATATCAAAACGAAGCTTGGATTTCTTGATCAATCCAATATCGCCAATAGAAAAGTATCTAAATCTTACAAAGAAGGAAGCCCAGTTGATAGAACGAGAATTTCTGTTACGAATGGGCTGAGAATTAAACTGAGAGATATGATGAATGATTTTCAGGCATTGAGAGATCAGATTCTGAAGGATCACAAAGAGGGTCTAAAGAGGAGGTATTTTGCTGCAACTGGAGAAGAAGCTAGCGAGGATGCCATAGAAAGGATGATTTCGGTAGGTGGGAAAGAGAAGATCTTTGAAGGGAAGAAAGAGTTGTTAATGGAGAATGAGGAGAGAGAAGAGGCTTTGAAGGAGATACAGAGGAGCTTGAAGGAGCTTCATCAGGTTTTTCTAGATATGGCTGTTCTGGTAGAAACTCAAGGAGAGCATATGAATAATATTGAGCAGAATATGAGTTGGGCTGGAGCTCATATCCAGGATGGAACAAAGGAGCTGTTGGATGCCAAGAAATTGAAGAGCAGAGCTCAATGGACTTACTGGATTGTAGCTCTGGTTTTAATTCTGCTGTTCATTTGCCTGATTTCTACCTTGGTTTTCTGA 894 40.6 MNDLMTKSFLSYVELKKQAMKDLEAGPDIEMGKLDPADEQNLSHFFEEVAVIKASMEEITNLLFDLQNLNEEAKSIYNANVLSGVREKINSDMVEVLRKAKNIKTKLGFLDQSNIANRKVSKSYKEGSPVDRTRISVTNGLRIKLRDMMNDFQALRDQILKDHKEGLKRRYFAATGEEASEDAIERMISVGGKEKIFEGKKELLMENEEREEALKEIQRSLKELHQVFLDMAVLVETQGEHMNNIEQNMSWAGAHIQDGTKELLDAKKLKSRAQWTYWIVALVLILLFICLISTLVF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4783671 4784564 + Bpe021249.1 Bpe07g00425 106194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00425 297 Gene3D - 197 296 - -
Bpe07g00425 297 Gene3D - 37 167 - -
Bpe07g00425 297 Coils Coil 52 72 - -
Bpe07g00425 297 CDD SNARE_syntaxin1-like 208 263 - -
Bpe07g00425 297 CDD SynN 42 192 IPR006011 GO:0016020
Bpe07g00425 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Bpe07g00425 297 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bpe07g00425 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Bpe07g00425 297 PANTHER SYNTAXIN-112 4 293 - -
Bpe07g00425 297 Pfam Syntaxin 45 239 IPR006011 GO:0016020
Bpe07g00425 297 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Bpe07g00425 297 SMART tSNARE_6 199 266 IPR000727 -
Bpe07g00425 297 PANTHER SYNTAXIN 4 293 IPR045242 -
Bpe07g00425 297 Coils Coil 200 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00425 Bpe-Chr7:4783671 Bpe15g00424 Bpe-Chr15:15775983 1.08E-120 dispersed
Bpe14g01345 Bpe-Chr14:10726119 Bpe07g00425 Bpe-Chr7:4783671 6.41E-12 dispersed
Bpe07g00425 Bpe-Chr7:4783671 Bpe08g00351 Bpe-Chr8:2103594 2.05E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00425 K08486 - csin:114258522 411.764