Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00449 ATGAAGATCCGATGCGATGTTTGTGGCAAACGCGAAGCCTCCGTCTTTTGCTCCGCCGACGAAGCCGCTCTCTGCGACGGCTGTGACAGCCATGTCCACCATGCGAACAAGCTCGCCGGACTACACACCCGTTTCTCTCTCCTCAATCCCACCTTCAAAGAGTCACCTCTCTGCGACATCTGCCAGGAGAGGCGAGCTTTCCTTTTCTGTCAGGAAGATCGGGCAATCCTCTGTAGAGAATGCGACGTTCCAATTCACAGAGCAAACGAACATACCCAGAAACATAATAGATTTCTTCTTACAGGCGTCAAGCTTTCTTCAACTTCTTCGTTCTCCCCAACTTGTTCTTCGTCCAGTGGGTGTGAAGCATCCATTGACACCGAAAGTAGAAGGTCGAGAACACGGACAAAGAGATCATCAAATACAGCTTACAATGGAGTATCTTCTTGTCCGTCTGAAATATCTCAGCCGGAAGGCATTGATTCAGGAACCTTCTCAGCAAGTAGTATATCAGAGTACTTAGAGACGTTGCCTGGATGGGGTATAGAAGATTTTCTTGATCCATCATTTTCCTCCCATGGCTTCCGTAAAGTTTTAGGTAGACCCAACATGGAATGA 618 47.9 MKIRCDVCGKREASVFCSADEAALCDGCDSHVHHANKLAGLHTRFSLLNPTFKESPLCDICQERRAFLFCQEDRAILCRECDVPIHRANEHTQKHNRFLLTGVKLSSTSSFSPTCSSSSGCEASIDTESRRSRTRTKRSSNTAYNGVSSCPSEISQPEGIDSGTFSASSISEYLETLPGWGIEDFLDPSFSSHGFRKVLGRPNME 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6308688 6309394 - Bpe021277.1 Bpe07g00449 106218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00449 205 Gene3D Classic Zinc Finger 1 99 - -
Bpe07g00449 205 MobiDBLite consensus disorder prediction 108 125 - -
Bpe07g00449 205 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Bpe07g00449 205 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Bpe07g00449 205 CDD Bbox1_BBX-like 57 100 - -
Bpe07g00449 205 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bpe07g00449 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Bpe07g00449 205 MobiDBLite consensus disorder prediction 138 158 - -
Bpe07g00449 205 CDD Bbox1_BBX-like 5 47 - -
Bpe07g00449 205 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bpe07g00449 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bpe07g00449 205 MobiDBLite consensus disorder prediction 108 158 - -
Bpe07g00449 205 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 197 - -
Bpe07g00449 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00449 - - - mnt:21391799 261.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00365 Bpe-Chr2:2405816 Bpe07g00449 Bpe-Chr7:6308688 4.48E-58 dispersed
Bpe05g00126 Bpe-Chr5:2779190 Bpe07g00449 Bpe-Chr7:6308688 2.03E-58 dispersed
Bpe07g00449 Bpe-Chr7:6308688 Bpe15g00849 Bpe-Chr15:18497243 1.17E-83 dispersed
Bpe07g00449 Bpe-Chr7:6308688 Bpe05g00323 Bpe-Chr5:16885232 1.02E-101 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00128 . 23 396 C2C2-CO-like Transcription Factor Family AT5G15850 51.5 2.2e-58 223.0
Bpe14g00128 . 25 396 C2C2-CO-like Transcription Factor Family AT3G02380 53.7 8.9e-65 244.2
Bpe02g01272 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 53.4 5.1e-63 238.4
Bpe13g01202 BCT 4 347 C2C2-CO-like Transcription Factor Family AT5G57660 54.4 1.4e-65 246.9
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 6.1e-80 294.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00449 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 55.8 3.7e-52 202.2
Bpe15g00849 BCT 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 8.2e-52 201.1
Bpe05g00323 BCT 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 1.5e-50 196.8
Bpe13g00423 . 1 113 C2C2-CO-like Transcription Factor Family AT2G21320 80.5 1.5e-49 192.6
Bpe13g00423 . 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 81.7 7.3e-50 193.7
Bpe05g00323 BCT 1 190 C2C2-CO-like Transcription Factor Family AT4G39070 56.5 7.6e-55 210.7
Bpe07g00449 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 6.4e-54 207.6
Bpe15g00849 BCT 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 7.1e-53 204.1
Bpe05g00126 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 1.8e-48 189.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21625 PF00643 zf-B_box 1.10E-07 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00449 Bpe_Chr07 FPKM 25.183575 27.229025 20.51935 22.204556 19.746309 17.767817 18.471581 21.293705 22.301895 19.786337