Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00462 ATGGCTAGTTTTCTTCCTGGTGATTCAACGCTTCATGGAATGTATGAAGGTGGTTCTTCTTCTCAGGACAAGTCTGAAGATGGTGCTCGATGGTACTTTTCCCGGAAGGAAATTGAAGAAAGTTCGCCATCTAAACAGGATGGGATTGATTTGAAAAAGGAGAGTTATCTACGCAAGTCATATTGTACCTATTTGCAAGATCTGGGAATGAGGCTGAAAGTACCTCAAGTAACAATTGCTACGGCTATAATTTTCTGCCACCGGTTTTTTCTTCGACAATCCCTTGCAAAGAACGATAGAAGGACCATTGCAACCATATGCATGTTTCTTGCTGGGAAAGTAGAAGAAACTCCGCGTCCGCTGAAAGATGTTATCCTTGTTTCATATGAGATTATACATAAAAAGGATGCAGCTGCAGTTCAAAAGATCAAGCAAAAGATTGTATTTGTTCCTTTATTTACCATCTCACTTCATTATGATCTTTGTTTACCATCTCACTTTCATGTGTATTTATTTAGTACAAACAGACGTAAGTTTCTTGTTTTCCTTCCGTGTATGAATCTTATGCAGGAGGTGTATGAACAGCAAAAAGAACTAATTTTACTTGGAGAGAGACTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTCGTTGAGGCAATAAAAAAATTCAAAGTTGCTCAAAATGCCCTTGCACAAGTAGCATGGAATTTTGTTAATGATGGATTGAGGACATCTCTTTGCTTGCAATTTAAACCCCACCACATTGCTGCTGGTGCCATTTTCCTTGCTGCTAAGTTCCTTAAAGTAAAGCTCCCTTCAGATGGGGAGAAAGTGTGGTGGCAAGAGTTTGATGTCACCCCACGTCAGTTGGAGGAAGTTAGCAACCAGATGTTGGAACTATACGAACAGAATCGAGTGCCACCTTCGAGTGAAGTTGATGGAAGCGCAATTGATGGATCTACTAATCGGATCTCTACTAAAGTTCCTACTAGCAGTGAAGAACACATGCCAACACAAAATCATTCACAGGCTGGAGGTACTTGCTCCAGATCTGCAACTTCTAAGCCTGGATCGTCAAGGCCGGCATCTGAACAATCATGTAAAGATCTTCATAGCGAGCCTCAGCGACCCAACCGGAGTCAAAGTAGTGAAAATGGGAGCATGGAGATGAAACATTATGTGAATCTCAAAGAAGATGGTGACTATAAACTAAATCCATATCATGAATCAGAGCCGCCCTTGCCTTCTCAGGACAGCATCGGTAAAGTTCAGAATTTGTCGAAGTTTCGGTTGGAGAGATTGGACGAACAAAATCAAGATGGCAGTTTGAGAACTAATGAAGCAAGAGAAGTAGTGGACTTGAAGGATAAACATGCGAGCAGAGGAGTAGAGGATAAAGATGGTGCAATGCGGTGGTCACCTCGAGAGGTAATAAAAAAGATTGATAAGGACAAGGTAAAGGCGGCATTGGAGAAACGGAGGAAGTCCCTTGGTGGTGTCAATCGGAAAACAGAATCAATGGACGAAGATGATCTTATCGAGAGGGAGCTTGAAGCTGGCATCGAACTGGCTGCTGAAAGTGCGAAAAATAAGCGAGAGGTAAGGCAAGGTTGGGCTAAGACGTCGAATAGGCCAGAATATGAGGATATGCGTCAAGAAAGTGATAGAGATGACCGTCGACAAGGAGTGATAGGACAATCAAATTATGGGCCTGATTTAAATAACATGGAAGAAGGGGAGTTATCAATTACTAATGATCCTGGCCTAGAATATCAGTCCCCAAAGTCGGGAAGCCGCAAACGAAAGACCGGGAGCCCACCCGGCAAAGTGTTTGAGGGGAAGCAGTGGCAAGATTCATTGGCTGCATCTCACCGAGATAAGCACTCTGATTATATGGGAGATGGAAACAGTGTAGGTCGGGTTCGTCACGTTGACAGGGACCACAAGCGGCATGTTCAAGAAAATCATGTATGA 1998 42.94 MASFLPGDSTLHGMYEGGSSSQDKSEDGARWYFSRKEIEESSPSKQDGIDLKKESYLRKSYCTYLQDLGMRLKVPQVTIATAIIFCHRFFLRQSLAKNDRRTIATICMFLAGKVEETPRPLKDVILVSYEIIHKKDAAAVQKIKQKIVFVPLFTISLHYDLCLPSHFHVYLFSTNRRKFLVFLPCMNLMQEVYEQQKELILLGERLVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSSEVDGSAIDGSTNRISTKVPTSSEEHMPTQNHSQAGGTCSRSATSKPGSSRPASEQSCKDLHSEPQRPNRSQSSENGSMEMKHYVNLKEDGDYKLNPYHESEPPLPSQDSIGKVQNLSKFRLERLDEQNQDGSLRTNEAREVVDLKDKHASRGVEDKDGAMRWSPREVIKKIDKDKVKAALEKRRKSLGGVNRKTESMDEDDLIERELEAGIELAAESAKNKREVRQGWAKTSNRPEYEDMRQESDRDDRRQGVIGQSNYGPDLNNMEEGELSITNDPGLEYQSPKSGSRKRKTGSPPGKVFEGKQWQDSLAASHRDKHSDYMGDGNSVGRVRHVDRDHKRHVQENHV 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7090849 7099137 - Bpe021297.2 Bpe07g00462 106231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00462 665 PANTHER CYCLIN 190 570 IPR043198 GO:0006357|GO:0016538
Bpe07g00462 665 PANTHER CYCLIN 2 149 IPR043198 GO:0006357|GO:0016538
Bpe07g00462 665 MobiDBLite consensus disorder prediction 627 665 - -
Bpe07g00462 665 Pfam Cyclin, N-terminal domain 32 136 IPR006671 -
Bpe07g00462 665 Gene3D - 217 320 - -
Bpe07g00462 665 PANTHER - 2 149 - -
Bpe07g00462 665 Gene3D - 18 215 - -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 1 28 - -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 310 373 - -
Bpe07g00462 665 SUPERFAMILY Cyclin-like 218 314 IPR036915 -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 575 600 - -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 533 665 - -
Bpe07g00462 665 CDD CYCLIN 216 277 IPR013763 -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 409 428 - -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 310 396 - -
Bpe07g00462 665 SUPERFAMILY Cyclin-like 27 217 IPR036915 -
Bpe07g00462 665 SMART cyclin_7 222 307 IPR013763 -
Bpe07g00462 665 SMART cyclin_7 63 145 IPR013763 -
Bpe07g00462 665 CDD CYCLIN 57 128 IPR013763 -
Bpe07g00462 665 PANTHER - 190 570 - -
Bpe07g00462 665 MobiDBLite consensus disorder prediction 533 570 - -
Bpe07g00462 665 PIRSF Cyclin_L 29 514 - -
Bpe07g00462 665 PIRSF Cyclin_L 427 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00462 K15188 CCNT; cyclin T - vvi:100265067 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00467 Bpe-Chr1:2874835 Bpe07g00462 Bpe-Chr7:7090849 3.65E-121 dispersed
Bpe04g00840 Bpe-Chr4:5529134 Bpe07g00462 Bpe-Chr7:7090849 1.96E-57 dispersed
Bpe07g00462 Bpe-Chr7:7090849 Bpe09g00610 Bpe-Chr9:14823462 2.30E-34 dispersed
Bpe07g00462 Bpe-Chr7:7090849 Bpe08g00421 Bpe-Chr8:2590675 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g39 . . Bda06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01027 . . . . . . Bpe07g00462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00462 Bpe_Chr07 FPKM 1.705989 0.858257 2.243214 1.64038 4.754555 1.708392 5.142451 1.766143 2.160847 2.228187