Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00469 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAGACCATAACGCTCGAGGTTGAGAGCAGTGATACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGAACAGTGGCAGATTATAACATTCAAAAGGAGTCTACACTTCATTTGGTGTTGAGGCTCAGGGGAGGGACTATGATTAAGGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGATATTGAGCCAACTGATACAATTGAACGCATCAAGGAGCGTGTTGAGGAGAAAGAGGGAATTCCTCCAGTGCAGCAAAGGCTTATATACGCAGGTAAACAGCTTGCAGATGACAAAACGGCCAAGGANTATAACATTGAAGGGGGGTCTGTTCTCCACCTGGTTCTTGCACTGAGGGGTGGCTCTCTTTAA 465 45.16 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTVADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKXYNIEGGSVLHLVLALRGGSL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7472617 7475299 + Bpe021308.1 Bpe07g00469 106238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00469 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bpe07g00469 154 PANTHER - 1 152 - -
Bpe07g00469 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Bpe07g00469 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Bpe07g00469 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Bpe07g00469 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Bpe07g00469 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bpe07g00469 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Bpe07g00469 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bpe07g00469 154 PANTHER UBIQUITIN 1 152 - -
Bpe07g00469 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Bpe07g00469 154 CDD Ubl_ubiquitin 1 76 - -
Bpe07g00469 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Bpe07g00469 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bpe07g00469 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bpe07g00469 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bpe07g00469 154 Gene3D - 78 154 - -
Bpe07g00469 154 Gene3D - 1 77 - -
Bpe07g00469 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00469 Bpe-Chr7:7472617 Bpe12g00042 Bpe-Chr12:341697 2.51E-25 dispersed
Bpe07g00469 Bpe-Chr7:7472617 Bpe11g01600 Bpe-Chr11:12060182 1.87E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00469 K12158 - mnt:112090934 279.256