Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00469 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAGACCATAACGCTCGAGGTTGAGAGCAGTGATACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGAACAGTGGCAGATTATAACATTCAAAAGGAGTCTACACTTCATTTGGTGTTGAGGCTCAGGGGAGGGACTATGATTAAGGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGATATTGAGCCAACTGATACAATTGAACGCATCAAGGAGCGTGTTGAGGAGAAAGAGGGAATTCCTCCAGTGCAGCAAAGGCTTATATACGCAGGTAAACAGCTTGCAGATGACAAAACGGCCAAGGANTATAACATTGAAGGGGGGTCTGTTCTCCACCTGGTTCTTGCACTGAGGGGTGGCTCTCTTTAA 465 45.16 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTVADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKXYNIEGGSVLHLVLALRGGSL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7472617 7475299 + Bpe021308.1 Bpe07g00469 106238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00469 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bpe07g00469 154 PANTHER - 1 152 - -
Bpe07g00469 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Bpe07g00469 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Bpe07g00469 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Bpe07g00469 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Bpe07g00469 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bpe07g00469 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Bpe07g00469 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bpe07g00469 154 PANTHER UBIQUITIN 1 152 - -
Bpe07g00469 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Bpe07g00469 154 CDD Ubl_ubiquitin 1 76 - -
Bpe07g00469 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Bpe07g00469 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bpe07g00469 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bpe07g00469 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bpe07g00469 154 Gene3D - 78 154 - -
Bpe07g00469 154 Gene3D - 1 77 - -
Bpe07g00469 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00469 K12158 NEDD8; ubiquitin-like protein Nedd8 - mnt:112090934 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00469 Bpe-Chr7:7472617 Bpe12g00042 Bpe-Chr12:341697 2.51E-25 dispersed
Bpe07g00469 Bpe-Chr7:7472617 Bpe11g01600 Bpe-Chr11:12060182 1.87E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1111 . . . . Bpe07g00469 . Bma08g00816 . . . . . . . . . . . . . . . . . Cla02g01821 Cam02g1929 Cec02g1954 Cco02g1995 Clacu02g1910 Cmu02g1858 Cre02g2172 . . . . . . . Cme11g01623 Blo15g00626 . . . . . . Bma12g00587 Sed01g3461 . . . . . . . . Bhi10g00953 Tan05g0598 Cmetu11g0435 . Hepe08g0637 . . . . . . . . . . Csa06g01160 Chy11g01032 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000061 12 9 9 13 10 12 1 13 13 6 9 12 13 5 12 15 12 6 1 12 9 11 13 12 3 0 11 14 12 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00469 Bpe_Chr07 FPKM 6.311637 7.087916 1.375847 1.655354 2.796277 1.962332 2.037257 1.179164 0.835533 1.137665