Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00480 ATGGCGATACTCGTGTTTTTTTGGGTTTCTTCGTCGTTTGAACTAAAACAACAAGATCTCGCCAATCTTCCACTGCAAATCCTCCTCGACTATGAGCGCTGCCTCCGCCATGCGGACTTCTTTCGTCGTGGGTTCGTCCACCATAATCGACCTCTTTGCCCGCTCTTATCTTCAGAAATTACGACCGGCGAGACAGAGATTTCCAGTTTTTCGTCATCGACGGAAATTTTCTACATCATGAGCTGGAGCGAGGTCTCATTTAACAATCGAAGCTTACATGCCATTAGTGATATACCTAATCCATATGAGAAAGCGATTTCAATTATCGGAAAGACCTTGGCCCCTTTTGATGAAGATGATTTAATTCCTTGCTTTGGCTTTGGTGATGCAACCACTCATGATCGAGAAGTATTTAGCTTTAAAATAGACCATTCACCTTGTCAGGGTTTTGAGGAAGTTTTGGATTGTTACAGAAAGATTGTGCCAAACTTGAGGCTCGCAGGGCCAACTTCTTACTCTCCCGTCATTGAAGCTGCCATTGACATTGTTGAGAGAAGTGGTGGCCAATATCATGTGTTGGTTATTATAGCAGATGGTCAGGTCACACGAAGCATCAATTTAAGTGACAAAGAGTTAAGCCCACAGGAGGAGAAAACAATCACATCAATTGTGAATGCAAGTGCATATCCTCTTTCAATTGTGCTTGTTGGAGTTGGGGATGGGCCATGGGACGACATGAAGAAGTTTGATGATAAAATTCCAGCACGTGATTTCGATAACTTTCAGTTTGTAAATTTCACTGATATTATGTCAAAGAGTGCGACCACCTCTGAGAAAGAAGCCGCATTTGCTCTTGCTGCCCTCATGGAGATCCCATTTCAGTATAAAGCGGCCATTGAACTTCGTATCCTTGGAAGTGTAAAAGGAAATGCGAAAAAACTTGTTCCACGCCCTCCTCCAATTCGTTACAACTCTACCCAAACTCACAGACCAGGCAACATCGCAGAAGCTCAGGATGCACCAAGCCAGATGGTCTGTCCAATTTGCCTCACTAATGGAAAGGATTTGGCCTTTGGCTGTGGGCATACGACTTGTACAGATTGTGGATCAAGATTATCTAGCTGTCCTATTTGTCGCCAGCCTATCGGCAGCCGCCTGAAACTGTACACTGGTTGA 1176 44.22 MAILVFFWVSSSFELKQQDLANLPLQILLDYERCLRHADFFRRGFVHHNRPLCPLLSSEITTGETEISSFSSSTEIFYIMSWSEVSFNNRSLHAISDIPNPYEKAISIIGKTLAPFDEDDLIPCFGFGDATTHDREVFSFKIDHSPCQGFEEVLDCYRKIVPNLRLAGPTSYSPVIEAAIDIVERSGGQYHVLVIIADGQVTRSINLSDKELSPQEEKTITSIVNASAYPLSIVLVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTDIMSKSATTSEKEAAFALAALMEIPFQYKAAIELRILGSVKGNAKKLVPRPPPIRYNSTQTHRPGNIAEAQDAPSQMVCPICLTNGKDLAFGCGHTTCTDCGSRLSSCPICRQPIGSRLKLYTG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8445802 8453338 - Bpe021318.1 Bpe07g00480 106249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00480 391 PANTHER COPINE FAMILY PROTEIN 1 84 390 - -
Bpe07g00480 391 Pfam Zinc finger, C3HC4 type (RING finger) 344 383 - -
Bpe07g00480 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 391 IPR013083 -
Bpe07g00480 391 SUPERFAMILY vWA-like 98 249 IPR036465 -
Bpe07g00480 391 SUPERFAMILY RING/U-box 338 384 - -
Bpe07g00480 391 SMART ring_2 346 378 IPR001841 -
Bpe07g00480 391 CDD RING-HC_RGLG_plant 345 389 IPR045317 GO:0061630|GO:0070534
Bpe07g00480 391 Pfam Copine 91 304 IPR010734 -
Bpe07g00480 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 84 390 - -
Bpe07g00480 391 ProSiteProfiles Zinc finger RING-type profile. 346 379 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00480 Bpe-Chr7:8445802 Bpe14g00234 Bpe-Chr14:2500933 1.89E-138 dispersed
Bpe07g00480 Bpe-Chr7:8445802 Bpe09g00523 Bpe-Chr9:14019303 5.34E-133 transposed
Bpe07g00480 Bpe-Chr7:8445802 Bpe11g01532 Bpe-Chr11:11420570 2.60E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00480 K16280 - csin:114274192 499.59