Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00480 ATGGCGATACTCGTGTTTTTTTGGGTTTCTTCGTCGTTTGAACTAAAACAACAAGATCTCGCCAATCTTCCACTGCAAATCCTCCTCGACTATGAGCGCTGCCTCCGCCATGCGGACTTCTTTCGTCGTGGGTTCGTCCACCATAATCGACCTCTTTGCCCGCTCTTATCTTCAGAAATTACGACCGGCGAGACAGAGATTTCCAGTTTTTCGTCATCGACGGAAATTTTCTACATCATGAGCTGGAGCGAGGTCTCATTTAACAATCGAAGCTTACATGCCATTAGTGATATACCTAATCCATATGAGAAAGCGATTTCAATTATCGGAAAGACCTTGGCCCCTTTTGATGAAGATGATTTAATTCCTTGCTTTGGCTTTGGTGATGCAACCACTCATGATCGAGAAGTATTTAGCTTTAAAATAGACCATTCACCTTGTCAGGGTTTTGAGGAAGTTTTGGATTGTTACAGAAAGATTGTGCCAAACTTGAGGCTCGCAGGGCCAACTTCTTACTCTCCCGTCATTGAAGCTGCCATTGACATTGTTGAGAGAAGTGGTGGCCAATATCATGTGTTGGTTATTATAGCAGATGGTCAGGTCACACGAAGCATCAATTTAAGTGACAAAGAGTTAAGCCCACAGGAGGAGAAAACAATCACATCAATTGTGAATGCAAGTGCATATCCTCTTTCAATTGTGCTTGTTGGAGTTGGGGATGGGCCATGGGACGACATGAAGAAGTTTGATGATAAAATTCCAGCACGTGATTTCGATAACTTTCAGTTTGTAAATTTCACTGATATTATGTCAAAGAGTGCGACCACCTCTGAGAAAGAAGCCGCATTTGCTCTTGCTGCCCTCATGGAGATCCCATTTCAGTATAAAGCGGCCATTGAACTTCGTATCCTTGGAAGTGTAAAAGGAAATGCGAAAAAACTTGTTCCACGCCCTCCTCCAATTCGTTACAACTCTACCCAAACTCACAGACCAGGCAACATCGCAGAAGCTCAGGATGCACCAAGCCAGATGGTCTGTCCAATTTGCCTCACTAATGGAAAGGATTTGGCCTTTGGCTGTGGGCATACGACTTGTACAGATTGTGGATCAAGATTATCTAGCTGTCCTATTTGTCGCCAGCCTATCGGCAGCCGCCTGAAACTGTACACTGGTTGA 1176 44.22 MAILVFFWVSSSFELKQQDLANLPLQILLDYERCLRHADFFRRGFVHHNRPLCPLLSSEITTGETEISSFSSSTEIFYIMSWSEVSFNNRSLHAISDIPNPYEKAISIIGKTLAPFDEDDLIPCFGFGDATTHDREVFSFKIDHSPCQGFEEVLDCYRKIVPNLRLAGPTSYSPVIEAAIDIVERSGGQYHVLVIIADGQVTRSINLSDKELSPQEEKTITSIVNASAYPLSIVLVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTDIMSKSATTSEKEAAFALAALMEIPFQYKAAIELRILGSVKGNAKKLVPRPPPIRYNSTQTHRPGNIAEAQDAPSQMVCPICLTNGKDLAFGCGHTTCTDCGSRLSSCPICRQPIGSRLKLYTG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8445802 8453338 - Bpe021318.1 Bpe07g00480 106249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00480 391 PANTHER COPINE FAMILY PROTEIN 1 84 390 - -
Bpe07g00480 391 Pfam Zinc finger, C3HC4 type (RING finger) 344 383 - -
Bpe07g00480 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 391 IPR013083 -
Bpe07g00480 391 SUPERFAMILY vWA-like 98 249 IPR036465 -
Bpe07g00480 391 SUPERFAMILY RING/U-box 338 384 - -
Bpe07g00480 391 SMART ring_2 346 378 IPR001841 -
Bpe07g00480 391 CDD RING-HC_RGLG_plant 345 389 IPR045317 GO:0061630|GO:0070534
Bpe07g00480 391 Pfam Copine 91 304 IPR010734 -
Bpe07g00480 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 84 390 - -
Bpe07g00480 391 ProSiteProfiles Zinc finger RING-type profile. 346 379 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00480 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csin:114274192 499.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00480 Bpe-Chr7:8445802 Bpe14g00234 Bpe-Chr14:2500933 1.89E-138 dispersed
Bpe07g00480 Bpe-Chr7:8445802 Bpe09g00523 Bpe-Chr9:14019303 5.34E-133 transposed
Bpe07g00480 Bpe-Chr7:8445802 Bpe11g01532 Bpe-Chr11:11420570 2.60E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00480 Bpe_Chr07 FPKM 1.246709 0.854462 0.0 0.0 0.201577 0.0 0.097685 2.81762 2.373298 3.103549