Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00481 ATGTCTCAGCCTACGGTGCGACCTTCCTTCTCCCCTCAACAGCCGCCTCTTCATCCTCAGACATCATTTGATGGTGGAGGTGGTGTTCAAGTCCGATGCGCCGGTTGCCGAAAGATCTTGACGCTTGCTCCCGGTGTCAAAGATTTTTTCTGTCCTACTTGTCAACTGCTTCAGATATTACCTCCAGAGCTCTTCGGTAGGACCCACTCAAGACTCTCTCCTCCTTCCTCACCACCACCGTCTTCGCTGTTTTTACCATCTCCTTCTCTTCCCCCTCAACATGTGCCAGCCCATGGCATCGATCCTACTAAAATCCAACTCCCTTGTGCTAATTGCAAAGCCATTCTCAATGTACCTCATGGTCTGCTTAGATTCGCTTGTCCTCAATGTGGGGTTGACCTGGCTGTTGATGTTTTCAAAGCCAAGCAGTTCTTTCGGGAGGAACTCAACGAGGTAGCCATTGAAGTGGAGCGTGAAGAAGATGAAGGGTGTATGATGGGTGAAACTTTTACCGATTATCGCCCCCAAAAATTATCCATAGGGTCACCTCATCCGGATCTTATTGTTGAGACATCCTCTCTATCAGCTGTGCAGCCACCTGACCCCACTTATAATCTTAAAGTACAAGATGACTTTGAAAGATCAAAGGCTTTGTCATGTCTTCAAATTGAAACACTGGTGTATACTAGTCAGAGACACCTCTACCACCTTCCTGATGGAACAAGGGCAGGATTCTTTATAGGAGATGGAGCTGGAGTTGGTAAAGGTCGGACAATTGCTGGGTTAATTTGGGAGAATTGGCACCACGGAAGGAGAAAAGCATTGTGGATCTCTATTGGTTCTGACTTGAAGTTTGATGCTAGAAGAGACTTAGATGATGTAGGTGCGACTAATGTTCAAGTTCATGCTTTGAACAAGCTGCCTTATTCTAAGCTTGATTCAAATCTTTTAAAGGTCAGAGAAGGGGTTGTATTTTTGACATATAACAGCCTCATAGCGTCTTCAGAGAAAGGTCGGTCACGGATGCAGCAGCTTGTACAATGGTGTGGATCAGGATTTGATGGCCTCATCATATTTGATGAGTGCCACAAAGCCAAAAACTTGGTACCTGAAACTGGGAATCAACCAACTCGAACTGGTGAAGCTGTTATTGAGATTCAGGCTCGACTTCCTGAAGCTCGTGTTGTTTACTGCTCAGCTACTGGTGCAACTGAGCCACGCAATATGGGTTATATGGTACGACTTGGTCTTTGGGGCGCCAAAACATCATTCAGTGATTTTCGTGAATTTCTAGGGGCCCTGGATAAAGGTGGTGTAGGAGCTCTAGAACTTGTTGCCATGGATATGAAAGCAAGGGGTATGTATGTATGCCGCACGCTAAGCTATAGAGGAGTTGAGTTTGAAGTTATAGAAGCACCTTTAGAAGCTGAGATGATGGAAATGTACAAAAGGGCTGCAGAATTTTGGGTGGAGTTGCGGATGGAGTTACTATCTGCAAGTGCTTTTCTTACTAATGACAGGCCTACTTCTAGTCAACTATGGCGATTGTATTGGGCAAGCCATCAACGTTTCTTCAGGCACATGTGCATATCTGCCAAAGTTCCTGCTACTGTTAGGTTAACTAAGCAAGCCTTGATGGATGGTAAATGTGTTGTCATTGGTCTTCAAAGCACTGGAGAGGCACGGACTGAGGAAGCTGTAACAAAATATGGTCTTGAACTGGATGATTTTGTTTCGGGACCTCGGGAACTGTTGCTGAAATTTGTGGAGGAATATTATCCTTTGCCTGAAAAGCCTGAAGCTCCTTCTGGAGAAGAAAGTGTCAAGGAGCTTCAGAGGAAGAGACACTCTGCTACTCCTGGGGTTTCAATGAAAGGGAGAGCAAGAAAGGTCGCAAAGTGGAAGCCTATTAGTGATGGTGAAAGTGATGAAGAATCAGAAAGTGATTCTGCCCAGGAATCAATGGAATCTGATGATGAATTTCAGATTTGTGAGATATGCAATTCTGAAGAGGTATTTTCTTTGAAGTGTTTGATTTTTCAAATGCTAGTAATATATATATTGTTTCTAAATTTTCTATTGCAGGAAAAAAAGAAACTGCTTCAGTGTTCCTGCTGTGGCCACCTTTTTCATCACGCCTGTGCAGTCCCTCCTATAATGGATGTAGTACCTGGAAATTGGTCATGCAATGCGTGCAAGGAGAAAACAGATGACTACATTCAAGCTAAACATGCATATGTAACTGAACTTTTGAAGAGGTATGAGGCAGCATCAAATCGGAAGTCTAAAGTTATGGAGATAATTCGATCACTGGCTCTTCCAAACAATCCTTTGGATGATATCATTGATCAGCTTGGAGGCCCTGATAAAGTAGCAGAAATGACTGGAAGAAGAGGCATGCTTGTAAGAGCCTCGAATGGAAAAGGGGTAACTTATCAGGCACGCAACACAAAAGATGTCACCATGGAAATGGTCAACATGCATGAAAAACAACTCTTTTTGGATGGTAAGAAGTTGATTGCCATCATTTCTGAAGCTGGATCAGCTGGAGTCTCATTGCAAGCAGACAAAAGAGCGGTAAATCAGAAAAGAAGAGTTCACTTGACTCTAGAACTACCTTGGAGCGCTGACAGAGCAATCCAACAATTTGGAAGAACCCATAGGTCCAATCAAGCTTCTGCGCCAGAATACAGGCTACTATTTACTGATCTTGGTGGAGAACGTCGATTTGCATCTATTGTTGCAAAACGGTTAGAATCTCTTGGAGCCTTAACACAAGGAGATAGAAGGGCCGGACCCTCTTTGAGTGCTTACAATTTTGATAGTTCTTTTGGGAAGAGGGCATTGATGATGATGTATAAAGGAATTATGGAGCAGGAGCCTCTTCCTCTTGTACCTCCAGGATGCTCGAGTGACAAACCCACTACAATTCAGGATTTTATCACAAAAGCAAAGGCTTGTCTTGTGTCTGTAGGAATAGCTAGGCATTCAGTTTTGCCTAATGGGAGAGACGCTGGAAAGTCAGGTTGTCGTATAGTTGATTCTGATATGAATGATGTTGGACGTTTTCTCAATCGGCTTTTAGGATTGCCACCTGAAATTCAAAATAGGATTTTTGAGTATTTCGTCCGCATCTTGGATCTTCTACTTCAGAATGCACGCATTGAAGGAAGCCTTGACTCAGGGATTGTTGACATGAAAGCTAACATTATTGAGTTACAAGGGAATCCGAAGGTTATCTCAGAACCCAGATTCCTAACTAAGTTTATCTTTGAGTTGATAATGTTTTTTGTTTTGCAGACTGTTCATGTGGATCAGATGTCTGGTGCAACGACAGAGCTGTTTACATTCAATCTGGATCGTGGTGTCACTTGGGAGTCCTGCTGTACCATACTCAACGATAAGCAAAGAGACGGCCATGGTTCCACCTATGATGGATTCTATGAATCTAAGAGGGAGTGGATGGGGAGACATCATTTCATTTTAGCATTTGAAGGTTCTGTTCCTGAAATGTACAAAATAATCCGTCCTGCAGTTGGGGAGTCATTAAGAGAAATGCCTCTGGCTGAGTTGAAAACAAAATATCGGAAAATAACGTCTTTAGAGAAAGCGCATAGTGGCTGGGAAGATGAATATGGTGTTTCATCAAAACAGTGCATGCACGGCCCAAATTGTAAGCTGGGCAATTACTGTACTGTAGGCAGAAGAATACAGGAGGTTAATGTTTTGGGCGGCCTTATTCTTCCTGTTTGGAGCACCATTGAGAAGGCCCTTTCAAAACAGGCTCGACAGAGCCACAGGAGGCTTCGTGTTGTGCGTATAGTAACAACTACTGATAATCAGAGAATCGTGGGACTTTTTGTGCCAAATGCGGCTGTTGAAGCTGTGCTCCAAGGTTTGTCTCCCTTCCCGACATCCACACACAATTGCGCACTCTCTATTAGCTGA 3948 43.64 MSQPTVRPSFSPQQPPLHPQTSFDGGGGVQVRCAGCRKILTLAPGVKDFFCPTCQLLQILPPELFGRTHSRLSPPSSPPPSSLFLPSPSLPPQHVPAHGIDPTKIQLPCANCKAILNVPHGLLRFACPQCGVDLAVDVFKAKQFFREELNEVAIEVEREEDEGCMMGETFTDYRPQKLSIGSPHPDLIVETSSLSAVQPPDPTYNLKVQDDFERSKALSCLQIETLVYTSQRHLYHLPDGTRAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISIGSDLKFDARRDLDDVGATNVQVHALNKLPYSKLDSNLLKVREGVVFLTYNSLIASSEKGRSRMQQLVQWCGSGFDGLIIFDECHKAKNLVPETGNQPTRTGEAVIEIQARLPEARVVYCSATGATEPRNMGYMVRLGLWGAKTSFSDFREFLGALDKGGVGALELVAMDMKARGMYVCRTLSYRGVEFEVIEAPLEAEMMEMYKRAAEFWVELRMELLSASAFLTNDRPTSSQLWRLYWASHQRFFRHMCISAKVPATVRLTKQALMDGKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEEYYPLPEKPEAPSGEESVKELQRKRHSATPGVSMKGRARKVAKWKPISDGESDEESESDSAQESMESDDEFQICEICNSEEVFSLKCLIFQMLVIYILFLNFLLQEKKKLLQCSCCGHLFHHACAVPPIMDVVPGNWSCNACKEKTDDYIQAKHAYVTELLKRYEAASNRKSKVMEIIRSLALPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRASNGKGVTYQARNTKDVTMEMVNMHEKQLFLDGKKLIAIISEAGSAGVSLQADKRAVNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTDLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNFDSSFGKRALMMMYKGIMEQEPLPLVPPGCSSDKPTTIQDFITKAKACLVSVGIARHSVLPNGRDAGKSGCRIVDSDMNDVGRFLNRLLGLPPEIQNRIFEYFVRILDLLLQNARIEGSLDSGIVDMKANIIELQGNPKVISEPRFLTKFIFELIMFFVLQTVHVDQMSGATTELFTFNLDRGVTWESCCTILNDKQRDGHGSTYDGFYESKREWMGRHHFILAFEGSVPEMYKIIRPAVGESLREMPLAELKTKYRKITSLEKAHSGWEDEYGVSSKQCMHGPNCKLGNYCTVGRRIQEVNVLGGLILPVWSTIEKALSKQARQSHRRLRVVRIVTTTDNQRIVGLFVPNAAVEAVLQGLSPFPTSTHNCALSIS 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8640676 8692021 + Bpe021319.2 Bpe07g00481 106250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00481 1315 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 30 55 IPR005735 -
Bpe07g00481 1315 PANTHER STRAWBERRY NOTCH-RELATED 28 145 IPR026741 GO:0006355
Bpe07g00481 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 832 937 IPR027417 -
Bpe07g00481 1315 Pfam P-loop containing NTP hydrolase pore-1 183 483 IPR039187 -
Bpe07g00481 1315 PANTHER STRAWBERRY NOTCH-RELATED 147 1301 IPR026741 GO:0006355
Bpe07g00481 1315 Coils Coil 142 162 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 68 97 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 642 657 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 1 23 - -
Bpe07g00481 1315 SUPERFAMILY FYVE/PHD zinc finger 696 735 IPR011011 -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 73 95 - -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 598 657 - -
Bpe07g00481 1315 Pfam C-terminal domain on Strawberry notch homologue 776 1065 IPR026937 -
Bpe07g00481 1315 PANTHER OS08G0223700 PROTEIN 147 1301 - -
Bpe07g00481 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 426 IPR027417 -
Bpe07g00481 1315 ProSitePatterns Zinc finger PHD-type signature. 664 732 IPR019786 -
Bpe07g00481 1315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 746 IPR013083 -
Bpe07g00481 1315 SMART PHD_3 663 733 IPR001965 -
Bpe07g00481 1315 Gene3D - 222 413 IPR027417 -
Bpe07g00481 1315 ProSiteProfiles Zinc finger PHD-type profile. 661 735 IPR019787 -
Bpe07g00481 1315 MobiDBLite consensus disorder prediction 602 616 - -
Bpe07g00481 1315 PANTHER OS08G0223700 PROTEIN 28 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00481 - - - jre:109003459 2005.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00481 Bpe_Chr07 FPKM 2.507936 2.247288 4.185008 5.235274 2.325145 3.246116 2.851152 0.151129 0.0 0.536228