Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe07g00493	ATGCCGGCCCTGGCTTGTTGCGTCGACGCTGCTCCTCCTCCCGGCTACGCTTTGGCTGGGGATAGCCCTCTTCCGTCGCCGGTACAATTTTCTGACGTACCTCAGGCGACCATAACCACTAACTCTATTACCCTCTCTGCTGGCGTTGAGAATTCCTCTTGGTCTCCCCCACTTTCAGCTGCTCTGTACAAGATCGATGGATGGGGATTGCCCTACTTTTCCGTCAACGATGCCGGCAATATGACGGTCCGTCCACATGGTAAAGCCACCTTGCCTCACCAGGATATTGATCTGCTCAAAGTTGTGAAAAAGGCTACAGATCCGAAATCCTTGGGTGGGCTTGGATTGCAGTTTCCACTCATCGTTCGCTTTCCCGACGTGCTTAAGAACCGCCTGGCGTCACTTCAGTCTGCTTTCGATTTTGCCATCCAATCCCAAGGTTACGGAGCTCATTATCAAGGCGTTTACCCTGTTAAATGCAACCAGGATCGATTCGTTGTAGAAGATATCATTGAATTTGGATCCCCATTCCGATTTGGCTTGGAGGCAGGGTCAAAACCAGAGCTGCTCCTTGCAATGAGCTGTTTGTGCAAGGGGAACCCAGCCGCTCTTCTGGTTTGCAATGGTTTTAAGGATGCAGAGTACATTTCACTAGCGTTGCTCGCTAGGAAACTAGCTTTGAACGCAGTCATAGTGCTCGAACAGGAGGAAGAACTTGATTTGGTGATTGATATGAGCAGGAAACTCTCTGTTTACCCTGTGATTGGTTTGCGTGCGAAGCTAAGGGCAAAGCATTCTGGTCATTTCGGATCAACTTCTGGCGAGAAAGGTAAGTTTGGACTAACAACTACGCAGATTCTGCGTGTAGTGAGGAAGCTTGAGCAAGTTGGGATGCTCCACTGTCTTCGATTACTGCATTTTCATATTGGGTCACAAATTCCGTCCACTGCTCTGCTTGCAGACGGCGTCAGCGAGGCAACTCAGATCTTCTGTGAACTGGTACGTCTTGGGGCCAGCATGCAGGTGATTGACATAGGAGGCGGTCTGGGAATTGATTATGATGGATCGAAATCGAGTGATTCTGAAATTTCAATTGGGTATGAGCTCGAAGAGTACGCTTCAGCAGTTGTTCAAGCCGTGCGTTCTGTGTGCGACCGCAGGTCCATCAAGCACCCCATAATCTGCAGCGAAAGTGGGCGAGCAATTGTTTCACATCATTCAGTTTTGATATTCGAGGCTGTTTCCGCTACTTCTTACGAGGCCCCCTCATTGACCTCGACTGGGCTACAGGGTTTTGTTGAGGGTCTGAAAGAGGATGCTCGTGAAGATTACTGGAATCTGTTGGCAACGGCATACAGGGGTGAGTACGAGGCTTGCATGAAACATGCCGATCAGTTGAAGCAGCGCTGCGTTGAACAATTCAAGGACGGATCTTTGGGTATCGAACAACTTGCAACTGTTGATGGGCTTTGCGCTTTTGTTTCTAAAGCAGTTGAGGCTTCCGATCCGGTGCGTACTTACCATGTCAATCTATCTATGTTCACTTCCATTCCCGATTTCTGGGGCATCGGCCAGTTGTTTCCTATAGTCCCAATTCATCGTCTTGATCAGAGACCGCTTGTTAGAGGAATTCTGTCTGATTTAACCTGCGACAGCGACGGGAAGATCGATAAGTTCATTGGAGGCGAGAGTAGCTTGCTTCTTCACGAACTGGAAGGTAACTGTAGTTTGGTGGGTGGGGGCAAGCCTTACTATCTAGGGATGTTCTTGGGAGGGGCTTACGAGGAGGCGCTCGGTGGAGTTCACAACCTGTTCGGTGGGCCTAGCTTAGTTCGGGTGTTGCAAAGTGATGGTCCCCATAGCTTTGCGGTGACGCACGCAGTGCCTGGTTCATCCTGCGCAGACGTTCTCCGGGTGATGCAGCACGAGCCCCAACTCATGTTCCAGATCCTCAAGCACCGTGCCGAGGAGTATGGTGTGGAGGATGAAGACGACTTGGCTAATAGCCTTGCCTGTTCCTTCCGCAATATGCCTTATCTGGTCACGAATTCTTGCAGCTTGACGGCGGTCAACAACAATGTGTTTTATCGTTGCAACGACGATGATTACTCTTCTGCCGTTGCTCCTGCTGCCGGAGATGATGACCAGTGGTCTTGTTGCTATGCTTGA	2169	50.16	MPALACCVDAAPPPGYALAGDSPLPSPVQFSDVPQATITTNSITLSAGVENSSWSPPLSAALYKIDGWGLPYFSVNDAGNMTVRPHGKATLPHQDIDLLKVVKKATDPKSLGGLGLQFPLIVRFPDVLKNRLASLQSAFDFAIQSQGYGAHYQGVYPVKCNQDRFVVEDIIEFGSPFRFGLEAGSKPELLLAMSCLCKGNPAALLVCNGFKDAEYISLALLARKLALNAVIVLEQEEELDLVIDMSRKLSVYPVIGLRAKLRAKHSGHFGSTSGEKGKFGLTTTQILRVVRKLEQVGMLHCLRLLHFHIGSQIPSTALLADGVSEATQIFCELVRLGASMQVIDIGGGLGIDYDGSKSSDSEISIGYELEEYASAVVQAVRSVCDRRSIKHPIICSESGRAIVSHHSVLIFEAVSATSYEAPSLTSTGLQGFVEGLKEDAREDYWNLLATAYRGEYEACMKHADQLKQRCVEQFKDGSLGIEQLATVDGLCAFVSKAVEASDPVRTYHVNLSMFTSIPDFWGIGQLFPIVPIHRLDQRPLVRGILSDLTCDSDGKIDKFIGGESSLLLHELEGNCSLVGGGKPYYLGMFLGGAYEEALGGVHNLFGGPSLVRVLQSDGPHSFAVTHAVPGSSCADVLRVMQHEPQLMFQILKHRAEEYGVEDEDDLANSLACSFRNMPYLVTNSCSLTAVNNNVFYRCNDDDYSSAVAPAAGDDDQWSCCYA	722

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
7	9502214	9504382	-	Bpe021335.1	Bpe07g00493	106262

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bpe07g00493	722	PIRSF	ARGDC	36	683	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	337	350	IPR022657	-
Bpe07g00493	722	SUPERFAMILY	PLP-binding barrel	124	406	IPR029066	-
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	148	162	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	206	221	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	232	253	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	535	560	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	384	401	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	124	139	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	256	278	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	592	613	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Arginine decarboxylase signature	510	531	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	156	174	IPR000183	GO:0003824
Bpe07g00493	722	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	180	192	IPR000183	GO:0003824
Bpe07g00493	722	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	299	312	IPR000183	GO:0003824
Bpe07g00493	722	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	592	605	IPR000183	GO:0003824
Bpe07g00493	722	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	394	413	IPR000183	GO:0003824
Bpe07g00493	722	TIGRFAM	speA: arginine decarboxylase	55	680	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	CDD	PLPDE_III_ADC	115	613	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	Gene3D	Alanine racemase	125	406	IPR029066	-
Bpe07g00493	722	PANTHER	ARGININE DECARBOXYLASE	1	721	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bpe07g00493	722	PANTHER	ARGININE DECARBOXYLASE	1	721	-	-
Bpe07g00493	722	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	149	404	IPR022644	GO:0003824
Bpe07g00493	722	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	63	614	IPR009006	GO:0003824
Bpe07g00493	722	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	156	174	IPR022653	-
Bpe07g00493	722	Gene3D	-	423	503	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe07g00493	K01583	E4.1.1.19; arginine decarboxylase [EC:4.1.1.19]	-	zju:107426702	1102.81

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe05g00311	Bpe-Chr5:16681746	Bpe07g00493	Bpe-Chr7:9502214	0	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi3g51	Blo02g00651	Blo15g00662	Bda06g00971	Bda08g00964	Bpe07g00493	.	.	Bma12g00535	.	.	Cma02g00359	Cma20g00804	Car02g00226	Car20g00688	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cone12ag1192	Cone8ag1240	.	.	Lsi10g00424	.	Chy11g00329	.	.	.	.	.	.	.	.	.	Sed05g3557	Cmo02g00362	Cmo20g00812	.	.	.	.	Cpe16g00280	Cpe05g01297	Bhi10g01930	Tan05g1229	Cmetu11g0754	.	Hepe08g0965	.	.	.	.	.	.	.	.	.	.	Csa02g01315	.	Cme11g00178

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0004369	2	1	2	2	2	1	2	1	1	1	1	1	2	1	1	2	1	2	2	1	1	1	1	4	1	1	1	1	2	1	43

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bpe07g00493	Bpe_Chr07	FPKM	4.092342	4.256429	7.923352	7.480786	19.515923	18.056034	19.544685	29.125067	30.533211	25.437042