Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00511 ATGGGAAGAGGAAAGATTGAGATTAAGCGAATCGAAAACACGACGAATCGACAAGTTACCTTCTGTAAGAGGCGCAATGGGTTGCTGAAGAAAGCCTATGAACTGTCTGTTTTGTGTGATGCAGAGGTCGCCCTCATCGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCAAATAACAGTGTGAGAGGGACTATAGAAAGGTACAAGAAGGCCTGCTCAGACTCTTCCAACACAGCTACTGTTGCTGAAACAAATACTCAGTACACTTTTCAAAAGTCATTAATGAGTCTATTAAACAACAGGAATATAACTGGAGAAGCCCTCAGCTCATTGTCCTTTAAGGATCTAAAGAACCTGGAGGGAAGATTGGAGAAAGGAATCAGTAGAATCAGAGCCAAAAAAGTGAGAATGATGCCTGTTTCTCTTATTTGA 435 42.53 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKACSDSSNTATVAETNTQYTFQKSLMSLLNNRNITGEALSSLSFKDLKNLEGRLEKGISRIRAKKVRMMPVSLI 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10389657 10392186 - Bpe021358.1 Bpe07g00511 106280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00511 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe07g00511 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe07g00511 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe07g00511 144 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 139 - -
Bpe07g00511 144 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bpe07g00511 144 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe07g00511 144 PANTHER MADS BOX PROTEIN 1 139 - -
Bpe07g00511 144 Pfam K-box region 100 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe07g00511 144 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Bpe07g00511 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe07g00511 144 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bpe07g00511 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe07g00511 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01071 Bpe-Chr2:13324724 Bpe07g00511 Bpe-Chr7:10389657 5.44E-58 dispersed
Bpe07g00511 Bpe-Chr7:10389657 Bpe03g00324 Bpe-Chr3:4797532 1.56E-42 dispersed
Bpe15g00056 Bpe-Chr15:7190164 Bpe07g00511 Bpe-Chr7:10389657 9.52E-18 dispersed
Bpe10g00716 Bpe-Chr10:13560694 Bpe07g00511 Bpe-Chr7:10389657 3.60E-21 transposed
Bpe14g00611 Bpe-Chr14:5079086 Bpe07g00511 Bpe-Chr7:10389657 1.84E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21630 PF01486 K-box 5.00E-11 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00511 K09264 - mnt:21385593 213.001