Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00562 ATGCTCGTCCAGCTGTGTAATATGAAACTAGATTTGGGATCAATGGGGTGGAGGAAATCTGCTACCGTGCACAAGAATTTGAAGATCTATGCGCAGGTTTTGGGCTTCGTGTTGATCAGTGTGGCGCAGTTTTCTTGGGGATTAACTAATCCCAATGACTTTGCTGCAATTAGTGATTTACATGCCTCATTTGGCTACCCTATTCTTCCTGGTTGGGGCACTGGACAAGATCCCTGTGGTGATGCCTGGCAGGGTGTCGTGTGCAACATTTCTGATATAGTAAAAATAGTTCTTAATGCGGCTAATCTGGGAGGAGAATTGGGTGACAATTTGACAATGTTTACTTCTATAAATACGATAGATCTGAGTAATAATCGCATTGGAGGGAGCATACCATCCAACTTACCCGTAACGATGCAAAACTTTTTTCTTGCAGCTAATCAGTTTACTGGAAGCATTCCAAGTTCATTATCCACTTTGACTCAATTGACTGCTTTATCGTTGAATGAAAATTACCTGAGCGGGGAAATTCCCAATTCATTCGAAACCCTTTCTGGACTGGTTAACTTAGACTTATCCAATAACAATTTGAGCGGGCCTCTACCTCTGTCTATGGAAAACTTGTTGGCGCTGACTACCCTGCGATTGCAGAACAATCAGCTTTCTGGTACCCTTGATGTTTTACAAGATCTTCCGCTCAAAGACTTGAATATAGAGAATAATCTGTTTTCTGGTCCAATACCTTCAGAGCTTATGAGCATACCAAATTTCAGATATGATGGAAATCCATTCAATTCTTCTGTTTCTCCAGTACTTTCGCCTTCACCCCCATCAAAACAATCACCGGTACCATTCTTTCCTGGAGAACCATCTCCGGAAAAGGCACCGCCGGAACTGGCTGACAGACCATCTTCATCAAATGAATCAAAATCAGGGAATAGAAAAAGGATAGTTTGGATATCAATTGCTGTGGTGTTATCATTTATAATCTTGGCATTAGTGCTTATATTATTTATGCCAAGGTGTCTCAGAAAAAGTAGAGAGGATGACAGAAATTTTAAACGGCATCAAATTGGTGCATACAAAGGTGACAGAGAAAGCCCAAGGAATGATGTGCCCCACCCCCCACCAACCAATAAAATTGAGAAAGTTCCAAAAGATGCTGTTGCAAAGCCAAAGGAGACTCAAAGAATAGAAGCGATACCAGAACCAACAGCACTAAAGCAGGATTATCATGAGATAGATATTAGTGCTCTGGATGACTATTTAATTCCTCCACCTCCTCCTCTGCCTCCCCCTCCACCTCCACCTCCACCTCCCCCTCCACCTCCACCACCATTTGCAGCAAAGATCAATAAGGAGACAATTATACCATCCGAAGTGACTCCCATGAAGCCTTCATCCACAAAATTAAACACCCCTACTTTCGCTAAGTCTTTCAATATTGCGTCCCTTCAGCAATTTACAAACAGTTTTTCTCAGGAAAATCTAATAGGAGGAGGAATGCTGGGGAACGTTTATAAGGCACTCATACCTAATGGAAAGCTGCTGGCGGTGAAAAAACTGGATAAAAGGACTTGCAGTCTACAAAAGGATGATGACTTTCTGGAAATGGTTAATAATATTGATACAATACGCCATTATAATATTGTGGAGCTCATGGGTTACTGTGCAGAACATGATCAAAGGCTGCTTATCTATGAGTACTGTAATAATGGTACTCTGCAAGATGCACTACACTCCGATGATGAAACCAAAAATAAACTTTCTTGGAATATCCGCCTGCAGATAGCTCTTGGAGCTGCTAGAGCCTTAGAGTATCTTCACGAGGTCTGTCAGCCTCCTGTCATGCATAGAAATTTCAAGTCTGCCAATATTCTTCTTGATGATGATTATTCTGTCCGTGTCGGCGATTGTGGTTTATCTCCTCTTATATCATCTGGCACTGTTAGTCAGTTGTCTGGTCATCTTCAATCTGTGTATGGATGGGGAGCTCCAGAGTATGAATCAGGAATTTACACTTTGAAGAGTGATGTTTACAGTTTTGGTGTGGTTATGCTAGAACTTTTGACAGGCCGGATGTCGTATGACAGGACGAGAATTAGAGGAGAACAATTTCTGGCGAGATGGGCGATACCACAACTTCATGACATTGATGCATTGTCAAGAATGGTCGATCCATCTCTCGGTCTCGAATACCCAGCCAAATCCTTATCACACTTTGCAGACATTATATCCCGATGTGTTCAGTCTGAGCCTGAATTCAGGCCAGCAATGTCTGAAGTAGTTCAGGATTTGTTGGACATGATAAGAAGAGAGCCTCATGAGAGTGGATCAGCAGAAGATTAA 2349 42.1 MLVQLCNMKLDLGSMGWRKSATVHKNLKIYAQVLGFVLISVAQFSWGLTNPNDFAAISDLHASFGYPILPGWGTGQDPCGDAWQGVVCNISDIVKIVLNAANLGGELGDNLTMFTSINTIDLSNNRIGGSIPSNLPVTMQNFFLAANQFTGSIPSSLSTLTQLTALSLNENYLSGEIPNSFETLSGLVNLDLSNNNLSGPLPLSMENLLALTTLRLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPSELMSIPNFRYDGNPFNSSVSPVLSPSPPSKQSPVPFFPGEPSPEKAPPELADRPSSSNESKSGNRKRIVWISIAVVLSFIILALVLILFMPRCLRKSREDDRNFKRHQIGAYKGDRESPRNDVPHPPPTNKIEKVPKDAVAKPKETQRIEAIPEPTALKQDYHEIDISALDDYLIPPPPPLPPPPPPPPPPPPPPPPFAAKINKETIIPSEVTPMKPSSTKLNTPTFAKSFNIASLQQFTNSFSQENLIGGGMLGNVYKALIPNGKLLAVKKLDKRTCSLQKDDDFLEMVNNIDTIRHYNIVELMGYCAEHDQRLLIYEYCNNGTLQDALHSDDETKNKLSWNIRLQIALGAARALEYLHEVCQPPVMHRNFKSANILLDDDYSVRVGDCGLSPLISSGTVSQLSGHLQSVYGWGAPEYESGIYTLKSDVYSFGVVMLELLTGRMSYDRTRIRGEQFLARWAIPQLHDIDALSRMVDPSLGLEYPAKSLSHFADIISRCVQSEPEFRPAMSEVVQDLLDMIRREPHESGSAED 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12165674 12171227 + Bpe021409.1 Bpe07g00562 106331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00562 782 Gene3D Phosphorylase Kinase; domain 1 458 569 - -
Bpe07g00562 782 SUPERFAMILY L domain-like 66 258 - -
Bpe07g00562 782 MobiDBLite consensus disorder prediction 422 449 - -
Bpe07g00562 782 PANTHER OS01G0253100 PROTEIN 40 781 IPR045271 GO:0004714|GO:0006468
Bpe07g00562 782 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 40 781 - -
Bpe07g00562 782 Gene3D Ribonuclease Inhibitor 48 275 IPR032675 -
Bpe07g00562 782 SUPERFAMILY Protein kinase-like (PK-like) 466 766 IPR011009 -
Bpe07g00562 782 MobiDBLite consensus disorder prediction 275 294 - -
Bpe07g00562 782 MobiDBLite consensus disorder prediction 380 398 - -
Bpe07g00562 782 ProSiteProfiles Protein kinase domain profile. 492 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe07g00562 782 MobiDBLite consensus disorder prediction 354 406 - -
Bpe07g00562 782 Gene3D Transferase(Phosphotransferase) domain 1 570 776 - -
Bpe07g00562 782 Pfam Protein tyrosine and serine/threonine kinase 495 766 IPR001245 GO:0004672|GO:0006468
Bpe07g00562 782 MobiDBLite consensus disorder prediction 354 371 - -
Bpe07g00562 782 MobiDBLite consensus disorder prediction 268 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00562 - - - csv:101213734 966.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00562 Bpe-Chr7:12165674 Bpe09g00067 Bpe-Chr9:465762 2.45E-83 dispersed
Bpe09g00053 Bpe-Chr9:349895 Bpe07g00562 Bpe-Chr7:12165674 5.66E-159 transposed
Bpe11g01163 Bpe-Chr11:8628323 Bpe07g00562 Bpe-Chr7:12165674 0 transposed
Bpe14g00667 Bpe-Chr14:5332924 Bpe07g00562 Bpe-Chr7:12165674 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00053 CCT 389 684 Strubbelig Receptor Gene Family AT1G11130 50.2 3.0e-80 296.6
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe09g00053 CCT 4 698 Strubbelig Receptor Gene Family AT1G53730 59.9 2.0e-196 682.6
Bpe09g00067 . 300 568 Strubbelig Receptor Gene Family AT1G53730 62.6 3.9e-91 332.8
Bpe09g00053 CCT 15 704 Strubbelig Receptor Gene Family AT3G14350 59.3 2.8e-187 652.1
Bpe09g00067 . 300 579 Strubbelig Receptor Gene Family AT3G14350 57.1 2.0e-76 283.9
Bpe09g00053 CCT 396 703 Strubbelig Receptor Gene Family AT4G22130 63.8 5.4e-112 401.7
Bpe07g00562 . 467 772 Strubbelig Receptor Gene Family AT4G22130 58.6 3.3e-101 365.9
Bpe14g00667 . 445 750 Strubbelig Receptor Gene Family AT4G22130 58.3 8.9e-99 357.8
Bpe11g01163 . 402 721 Strubbelig Receptor Gene Family AT4G22130 55.4 6.4e-97 351.7
Bpe09g00067 . 300 575 Strubbelig Receptor Gene Family AT4G22130 59.9 2.3e-91 333.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63418 PF07714 PK_Tyr_Ser-Thr 1.40E-43 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00562 Bpe_Chr07 FPKM 0.218623 0.202525 0.746536 1.100667 43.438812 41.781273 37.561691 0.38547 0.163337 0.086044