Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00633 ATGCCAAATATTCTCCCAAGTATTTCCCCTCCACCGTCTGCTTTCCTCGGACCAAAATGTGCTCTATGGGAGTGTTTCAGACCTGCCCAAGTATCGGAATGGTGCCATGACTACTGTAGTACCTGTCATTCAGTTCTAGCAAAAAATGAAGGTTTTGCTGGTATGAACCCCATCGTGCGACCTGGAGGCATTGGTTTGAAAGATGGTCCTTTATTAGCTGCTCTCAATGCAAAGTCACAGGGAAAGGAAGTTGGAATCCCTACATGCGATGGAGCTGCCACTTTGAAATCTCCCTGGAATGCTCCAAATCTATTTGATGTTTCCTTTCTTCACGGCGAGACTTTGAGAGAATGGCTCTTTTTTGGCAAACCCCGAAGAGCATCTGAGAGTGGATATCGAAAACAAAGGTCAATACTGGATTATCCAGGACGTGGTTGGCATGAATCGAGAAAGCAGGTGATGAAAGAATATGATGGGCAGAAGAGGTCTTATTACATGGATCCTCAGCCATCGAGTTCCTACGAATGGCATTTGTACGAATACGAAATCAACGACTATAATTCATGTGCATTGTATAGGTTGGAATTCAAGCATTCTAATGGTAAGAAGAGCCAGAAGGGGAAAGTGCCTACTGACTCTCTTGCCGATTTGCAGAAGAAGATGGGACGGCTCACGGCAGAGGGTCCTCCATAG 693 45.45 MPNILPSISPPPSAFLGPKCALWECFRPAQVSEWCHDYCSTCHSVLAKNEGFAGMNPIVRPGGIGLKDGPLLAALNAKSQGKEVGIPTCDGAATLKSPWNAPNLFDVSFLHGETLREWLFFGKPRRASESGYRKQRSILDYPGRGWHESRKQVMKEYDGQKRSYYMDPQPSSSYEWHLYEYEINDYNSCALYRLEFKHSNGKKSQKGKVPTDSLADLQKKMGRLTAEGPP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13009488 13010375 - Bpe021483.1 Bpe07g00633 106402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00633 230 MobiDBLite consensus disorder prediction 200 230 - -
Bpe07g00633 230 PANTHER TRANSCRIPTION FACTOR VOZ1 2 229 IPR039277 GO:0006355|GO:0048578
Bpe07g00633 230 PANTHER TRANSCRIPTION FACTOR VOZ2 2 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00633 - - - csv:101211467 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00633 Bpe-Chr7:13009488 Bpe08g00403 Bpe-Chr8:2463745 2.26E-119 dispersed
Bpe07g00633 Bpe-Chr7:13009488 Bpe01g00454 Bpe-Chr1:2764252 1.04E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe01g00454 CCT,ECH 2 481 VOZ-9 Transcription Factor Family AT1G28520 70.4 4.7e-197 684.1
Bpe08g00403 CCT,ECH 1 418 VOZ-9 Transcription Factor Family AT1G28520 68.3 3.9e-167 584.7
Bpe07g00633 . 3 230 VOZ-9 Transcription Factor Family AT1G28520 71.9 5.2e-95 345.1
Bpe01g00454 CCT,ECH 27 420 VOZ-9 Transcription Factor Family AT2G42400 51.5 7.1e-107 384.4
Bpe08g00403 CCT,ECH 1 357 VOZ-9 Transcription Factor Family AT2G42400 52.8 1.4e-94 343.6
Bpe07g00633 . 7 224 VOZ-9 Transcription Factor Family AT2G42400 66.5 5.9e-85 311.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21642 None None None None Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00633 Bpe_Chr07 FPKM 10.302512 11.12164 1.049434 1.347295 23.790815 23.233509 23.759066 0.179417 0.06082 0.064079