Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00650 ATGTCGTCTAAGTCTACGAACAAGACAAACTGTTCAAGAAGCAGCTCTGCCAGATCGAAACATGGATCTCGAGTTGTTACACAGACTCCCATTGACGCTAAACTTCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGATTACTCCACTTCCATTGACTTCAATCTTTCTAGCTCCACCAGCAATGTTCCATCGTCAACAGTTTCGGCTTACCTTCAAAGGATGCAGAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCTGAAATGCTGGACTTGGCCCCGCTCGCTGTTCCGAGCATCGAGCAGCAAGATGCTTTGACCTTTGGAACAGATGTTCGAACACTTTTTCAAACCTCGGGTGCTGCTGCCCTGCACAAAGCTAGCAAAATTAGGGAAGTCAACCTTTTAAATCCTATATTGCTTCACTGTAAAACTTCAGGAAAGCCCTTTTATGCAATTCTTCATCGAATTGATGTTGGTTTAGTCATAGATTTAGAACCTGTTAATCTAGCAGACGTACCCGTGACGGCTGCCGGGGCATTGAAATCGTATAAGCTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGTTGGTCAAAGAAGTTAGTGATTTAACTGGGTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCCGAGTGCCACAGGCCCAATTTGGAACCATATCTGGGTTTACATTACCCGGCTACAGATATACCGCAAGCCTCAAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGCGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAAATTGACTCAGCCATTGAGTCTTTGTGGTTCGGTTCTGAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATGGCATCTCTTGTTATGTCTGTGACGATCGACGAGGAGGATAATGAGGTGGAAAGCGATCAGCAGAAGGGAAGGAAATTGTGGGGCTTAGTGGTTTGTCATCACACGAGTCCTTGGTTTATCCCATTTCCTTTGCGATATGCCTGTGAGTTCTTGATTCAAGTTTTCAGTATTCAAATCAACAAAGAAGTTGAGCTGGCTGCTCAATTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTAAGAGATGTCCCTGTCGGAATCATTACACAATCGCCAAATATAATGGATCTCGTCAAGTGCGATGGAGCCGCTCTTTATTACAAGAAGAAATTCTGGGTGCTAGGAGTTACTCCGGCCGAAGCACAAATTAGAGATATGGCTGATTGGCTTCTTCAGAATCATAGTGGGAGCACTGGGCTGAGTACGGATAGTCTCGCGGAAGCTGGCTACCCCAGAGCTTCTGGTCTCAGCAATGAGGTTTGCGGGATGGCTGCCATTAAAATCACAGCAAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCGAACGACAAGGACGATGGGCGGAAGATGCATCCCAGGTCGTCTTTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAGGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGAGGATCTCTACAGGAAGAGATAGAGGATGATTCCAAAATAATTGTGAATGTTCCCTCAGCAGATGACACGCTACAAAGTTTGGATGAATTGCGGGTCGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCTGTCCCCATCTTGGCTGTTGATGCCTCAGGTGTTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACGGGAGTGCCAGTACAAGAAGCAATTGGCAGACTCTTTGTCGATGTTGTTGCTGATGAGTCGGTTGAGGTGGTGAGGAATATGCTTTCCTTGGCTCTGCAAGGTATAGAAGAACGAAGTGTGGAAATTAAACTCAAAACATATGGCCCCCAGCAAAGAAATGGCTCGATTATTTTAGTAGTCAATGCTTGTTGTAGCCGAGACACGAAGGAAAATATTGTGGGGAGTTGCTTTATCGGACAAGATGTGACTGGACAGAGACTCATTATGGACCAATATACTCGTCTCCAAGGTGATTATAATGGAATTATGCAGAGCCCCTCTACACTTATTCCTCCGATTTTCATGACTGATGAGCATGGCCGATGCTCAGAATGGAACGATGCTATGCAAACGTTATCTGGTTTGAAGAGAGAAGAAGCAATCGATAAGATGCTTCTCGGAGAGGTCTTCACCATCAATAGTGTCGGTTGTCGGGTCAAAGATCAAGACACATTGACAAAGCTTAAAATTTTGTTTAATAGGGTGGTTTCATACCAGGATGTCGACAAAATTTTGTTCGGCTTTTTTGATCGGCAGAACAATTACGTTGAAGCTTTACTTTCTGCAGATAAAAGGGTCGATTCAGAGGGGAGAATCACGAGAGTTTTATGTTTTTTGCATGTGGCGAGTCTGGAACTTAAACATGCTATCCATATGCAGAAAATATCAGAACAGGCTGCAGATGATAGCGTCAAGAAGTTGACGTACCTTCGGAGGGAGATCAGAAAACCGCTCAGTGGGATTCAGTTTATGCAGAATCTCATGGGCTCTTCTGATATAAGCGCAGAGCAAAAGCAGCTACTCAAGATAAGCACATCCTGTCAGGATCAATTGGTCAAGATTGTAGATGAAACTGATATCGAAAATATCGATGAATGCTTTATGGAGATGAGCTCTGGTGAATTCAACCTGGGAGATGTTCTTGAAGTTGTCATGAATCAAGTCATGGTTTTAGGGCAAGAACGACGAATCCAGGTCATCCTCGATTCTCCTTCAGAGGCGTCATCGTTTCATTTGTATGGCGACAATTTAAGGCTTCAGCAGGTACTTTCAGATTTTTTGAGTAGTGCTGTTGTCTTTGTCCCGGCATCTGAAGGATCTTCAGTTTCCCTCGAAGTGATTCCGAAGAAAAAACATATTGGATCCAAAATGTGTATCATTCATCTTGAATTTAGGATCGTTCATCCATCGCCTGGAATTCCCGAGATTTTAATCCAGGAGATGTTTCATCACAACAATAACGTCTCAAGGGAAGGTCTTAGTCTATATATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACCGTACAGTACCTAAGAGAAGCAGAGAGATCATCCTTCATTATTATTGTAGAATTCCCACAAGTAAAAAAGATTGATAAATGA 3369 43.43 MSSKSTNKTNCSRSSSARSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSSSTSNVPSSTVSAYLQRMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALHKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPNLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSKLTQPLSLCGSVLRSPHGCHGQYMANMGSMASLVMSVTIDEEDNEVESDQQKGRKLWGLVVCHHTSPWFIPFPLRYACEFLIQVFSIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIITQSPNIMDLVKCDGAALYYKKKFWVLGVTPAEAQIRDMADWLLQNHSGSTGLSTDSLAEAGYPRASGLSNEVCGMAAIKITAKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQEEIEDDSKIIVNVPSADDTLQSLDELRVVTNEMVRLIETAAVPILAVDASGVINGWNIKASELTGVPVQEAIGRLFVDVVADESVEVVRNMLSLALQGIEERSVEIKLKTYGPQQRNGSIILVVNACCSRDTKENIVGSCFIGQDVTGQRLIMDQYTRLQGDYNGIMQSPSTLIPPIFMTDEHGRCSEWNDAMQTLSGLKREEAIDKMLLGEVFTINSVGCRVKDQDTLTKLKILFNRVVSYQDVDKILFGFFDRQNNYVEALLSADKRVDSEGRITRVLCFLHVASLELKHAIHMQKISEQAADDSVKKLTYLRREIRKPLSGIQFMQNLMGSSDISAEQKQLLKISTSCQDQLVKIVDETDIENIDECFMEMSSGEFNLGDVLEVVMNQVMVLGQERRIQVILDSPSEASSFHLYGDNLRLQQVLSDFLSSAVVFVPASEGSSVSLEVIPKKKHIGSKMCIIHLEFRIVHPSPGIPEILIQEMFHHNNNVSREGLSLYISQKLVKIMNGTVQYLREAERSSFIIIVEFPQVKKIDK 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13229839 13234132 + Bpe021503.1 Bpe07g00650 106419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00650 1122 ProSiteProfiles Histidine kinase domain profile. 897 1118 IPR005467 -
Bpe07g00650 1122 PANTHER PHYTOCHROME C 1 1117 - -
Bpe07g00650 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Bpe07g00650 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 724 IPR035965 -
Bpe07g00650 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1117 - -
Bpe07g00650 1122 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Bpe07g00650 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Bpe07g00650 1122 CDD HisKA 895 945 IPR003661 GO:0000155|GO:0007165
Bpe07g00650 1122 Pfam GAF domain 220 398 IPR003018 GO:0005515
Bpe07g00650 1122 SMART gaf_1 219 408 IPR003018 GO:0005515
Bpe07g00650 1122 SMART HKATPase_4 1002 1118 IPR003594 -
Bpe07g00650 1122 Gene3D PAS domain 755 868 - -
Bpe07g00650 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1111 IPR036890 -
Bpe07g00650 1122 MobiDBLite consensus disorder prediction 1 26 - -
Bpe07g00650 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 808 IPR035965 -
Bpe07g00650 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bpe07g00650 1122 MobiDBLite consensus disorder prediction 1 27 - -
Bpe07g00650 1122 Gene3D - 403 576 IPR043150 -
Bpe07g00650 1122 CDD HATPase_Phy-like 1001 1114 IPR044767 -
Bpe07g00650 1122 Pfam Phytochrome region 411 586 IPR013515 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Bpe07g00650 1122 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Bpe07g00650 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1112 IPR003594 -
Bpe07g00650 1122 Gene3D PAS domain 602 745 - -
Bpe07g00650 1122 TIGRFAM sensory_box: PAS domain S-box protein 620 732 IPR000014 -
Bpe07g00650 1122 CDD PAS 757 868 IPR000014 -
Bpe07g00650 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 729 865 IPR035965 -
Bpe07g00650 1122 Pfam PAS fold 616 730 IPR013767 GO:0006355
Bpe07g00650 1122 Pfam PAS fold 746 868 IPR013767 GO:0006355
Bpe07g00650 1122 SUPERFAMILY GAF domain-like 406 585 - -
Bpe07g00650 1122 SMART pas_2 745 814 IPR000014 -
Bpe07g00650 1122 SMART pas_2 615 681 IPR000014 -
Bpe07g00650 1122 PIRSF Phytochrome_conventional 2 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe07g00650 1122 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bpe07g00650 1122 Gene3D - 200 559 IPR029016 -
Bpe07g00650 1122 CDD PAS 624 730 IPR000014 -
Bpe07g00650 1122 Gene3D PAS domain 78 322 - -
Bpe07g00650 1122 Gene3D - 929 1110 IPR036890 -
Bpe07g00650 1122 SUPERFAMILY GAF domain-like 199 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00650 - - - qsu:111989287 1803.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01845 Bpe-Chr2:20583218 Bpe07g00650 Bpe-Chr7:13229839 0 dispersed
Bpe07g00650 Bpe-Chr7:13229839 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe07g00650 Bpe-Chr7:13229839 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00409 . 493 1672 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1452.6
Bpe15g00478 . 564 1761 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1403.3
Bpe03g00033 . 17 996 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1351.3
Bpe14g00730 . 303 1276 Histidine Kinase Gene Family AT2G01830 52.3 6.5e-276 947.2
Bpe05g00945 . 57 1056 Histidine Kinase Gene Family AT2G01830 50.3 2.2e-263 905.6
Bpe02g00521 . 1 1048 Histidine Kinase Gene Family AT5G10720 53.8 5.4e-279 957.2
Bpe02g01845 . 2 1121 Histidine Kinase Gene Family AT1G09570 77.2 0.0e+00 1759.2
Bpe07g00650 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1253.0
Bpe05g00798 BCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1168.3
Bpe13g00697 BCT 29 1120 Histidine Kinase Gene Family AT1G09570 52.9 0.0e+00 1158.3
Bpe02g00962 . 36 1111 Histidine Kinase Gene Family AT1G09570 50.4 6.9e-313 1070.1
Bpe05g00798 BCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1636.3
Bpe13g00697 BCT 30 1084 Histidine Kinase Gene Family AT2G18790 75.0 0.0e+00 1599.7
Bpe02g00962 . 15 1050 Histidine Kinase Gene Family AT2G18790 61.9 0.0e+00 1279.6
Bpe11g01109 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.4 0.0e+00 1214.5
Bpe07g00650 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1111.3
Bpe02g01845 . 22 1056 Histidine Kinase Gene Family AT2G18790 51.2 1.4e-308 1055.8
Bpe07g00650 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1398.6
Bpe13g00697 BCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1124.4
Bpe05g00798 BCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.2 0.0e+00 1119.4
Bpe02g01845 . 10 1116 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1107.8
Bpe05g00798 BCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1655.2
Bpe13g00697 BCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1642.5
Bpe02g00962 . 35 1111 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1305.0
Bpe11g01109 . 20 1107 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1245.0
Bpe07g00650 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1144.8
Bpe02g00962 . 14 1112 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1396.3
Bpe11g01109 . 14 1108 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1327.0
Bpe05g00798 BCT 37 1119 Histidine Kinase Gene Family AT4G18130 59.1 0.0e+00 1258.8
Bpe13g00697 BCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.2 0.0e+00 1249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00650 Bpe_Chr07 FPKM 23.323868 22.862213 2.761699 3.578938 7.198843 8.315928 6.401265 0.048281 0.081834 0.0