Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe07g00672 | ATGAACTCCAATCTCAACTCCGCCGCCGCCGGTTTCACCTCCCATTTTCCCTTTAACGCTGTCTCCGGTACCAACTTCGATGGTGGGGCTTCTTTGGAAGCTCCTACTGCTCCTGCTTTCAAACGCCGCCACCAGAATTCTCGGCGGAAGCGGTCAAAAATGGTCAGAATCGACGATGATCCGGCGGCTGTTTCCAGTTCTAGCAGCTTTTCGAAGCCGAAATACGTGAAAAAACCAGACCCAAATGCACCTAAAATAACCCGACCTTGTACCGAATGTGGGAAAAGGTTTTGGTCGTGGAAAGCGCTTTTTGGCCACATGAGGTGCCATCCTGAACGCCAGTGGCGAGGTATAAACCCACCGCCGAATCTCTGTTCACCTAATGTCTTCTCCGTCAGCGATTTCGAATCGGAAATGACAGAAGAAGATAATGAGGTCGCAGAATGTTTGATTATGCTAGCAACTACCCCAACCCCCATTGACGATCGAACTCAAAGCTTTACTTCCACAAGCGATGGAGAATTTCATCCTTCTGATAGTTTCCCGGTAGACGAACTGCCAGTGATCAGAGAAGCCGAATGCGCGGGTCCGTCCTGGCGATCGTTCGAGTGCTCAAGTTGCAAGAAAGTGTTCGGGTCCCACCAGGCGCTGGGCGGCCATAGAGCGACTCACAAGAACGTGAAAGGCTGCTTCGCCATTACGAGAAACGGTTCAGAGGTTGAAGACGATCAGGTGGGAGAGCGAGAACGGGAGAGTAACACGGAGGAGAAGATGGCGATGGTATTGGGCGGCGCAGAAGGACACAGGTGCAGCATTTGCATGAGAGTTTTCTCAAGTGGACAAGCTCTAGGTGGGCACAAGAGGTGCCACTGGGAGAAAGGGGAGGATCAGCCATTGCTGAGCCCTTATGTTTCTTCTTCAGCAAGGGAAGGTTGTCATAATCTGGACTTGAATTTGCCTCCGCCATTGGATGAAGATTACTCCTCTTCGTATTCTTCAAACCTCACTCTAGATCTAAGGTTGACTCTTTGA | 1032 | 50.78 | MNSNLNSAAAGFTSHFPFNAVSGTNFDGGASLEAPTAPAFKRRHQNSRRKRSKMVRIDDDPAAVSSSSSFSKPKYVKKPDPNAPKITRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPPNLCSPNVFSVSDFESEMTEEDNEVAECLIMLATTPTPIDDRTQSFTSTSDGEFHPSDSFPVDELPVIREAECAGPSWRSFECSSCKKVFGSHQALGGHRATHKNVKGCFAITRNGSEVEDDQVGERERESNTEEKMAMVLGGAEGHRCSICMRVFSSGQALGGHKRCHWEKGEDQPLLSPYVSSSAREGCHNLDLNLPPPLDEDYSSSYSSNLTLDLRLTL | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 13407320 | 13408351 | + | Bpe021522.1 | Bpe07g00672 | 106441 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe07g00672 | 343 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 90 | 110 | IPR013087 | - | |
| Bpe07g00672 | 343 | SMART | c2h2final6 | 202 | 224 | IPR013087 | - | |
| Bpe07g00672 | 343 | SMART | c2h2final6 | 88 | 110 | IPR013087 | - | |
| Bpe07g00672 | 343 | SMART | c2h2final6 | 268 | 290 | IPR013087 | - | |
| Bpe07g00672 | 343 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 202 | 229 | IPR013087 | - | |
| Bpe07g00672 | 343 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 270 | 290 | IPR013087 | - | |
| Bpe07g00672 | 343 | MobiDBLite | consensus disorder prediction | 34 | 83 | - | - | |
| Bpe07g00672 | 343 | Gene3D | Classic Zinc Finger | 200 | 290 | - | - | |
| Bpe07g00672 | 343 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 36 | 343 | - | - | |
| Bpe07g00672 | 343 | SUPERFAMILY | beta-beta-alpha zinc fingers | 89 | 224 | IPR036236 | - | |
| Bpe07g00672 | 343 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 268 | 295 | IPR013087 | - | |
| Bpe07g00672 | 343 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 36 | 343 | - | - | |
| Bpe07g00672 | 343 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 204 | 224 | IPR013087 | - | |
| Bpe07g00672 | 343 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 88 | 115 | IPR013087 | - | |
| Bpe07g00672 | 343 | Pfam | C2H2-type zinc finger | 89 | 112 | - | - | |
| Bpe07g00672 | 343 | Pfam | C2H2-type zinc finger | 268 | 292 | - | - | |
| Bpe07g00672 | 343 | Pfam | C2H2-type zinc finger | 202 | 225 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe03g00735 | Bpe-Chr3:27440956 | Bpe07g00672 | Bpe-Chr7:13407320 | 1.07E-09 | dispersed | |
| Bpe07g00672 | Bpe-Chr7:13407320 | Bpe14g01013 | Bpe-Chr14:7537298 | 1.10E-30 | dispersed | |
| Bpe09g00097 | Bpe-Chr9:671520 | Bpe07g00672 | Bpe-Chr7:13407320 | 7.79E-11 | dispersed | |
| Bpe14g00712 | Bpe-Chr14:5543607 | Bpe07g00672 | Bpe-Chr7:13407320 | 2.60E-150 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 21649 | PF13912 | zf-C2H2_6 | 6.50E-11 | CL0361 | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe07g00672 | - | - | jre:108997351 | 322.398 |