Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00674 ATGAAGAAAGCTGGTACCCCTATAACAGACTTCTCGGTGTTCCCTTCTGTCTTCAAGGCTTTTTCAAATCTGTCTCTTAAACACGGTGAGTATCTCCATGGTTATTTCATCAGACAAGGGCTTGATTCAGTCACTTCCATTTCTAATTCAGCTATAGATTTCTACATGAAATGGGGCGATTTGGGTTCTGCGCGAACTCTTTTCGATTGCTTGGAAAACAGAGATTCCATCTCTTGGAACATAATGGTTCATGGAAATCTTAATTACGGTTCTTTAGAGGAAGGATTGCAATGGTTTAAGAAAGGAAGAAACGCTTGCTTTCTCCCCAATACTTCCACTATGGTGCTTGTAATTCGAGCATGTCGTAAACTGGAAGCTTATCTCGAAGGATTAGAATTCCATGGCTACGTGATTCGATGCGGGTTTTGGGATATTCCTTCGGTTCAAAACTCATTGTTAGCTTTTTATGCAGATACCGACATTGATTGGGCTCATAAGCTGTTCGACGAAATGCCTGAAAGAGATGTCATATCTTGGAGCGTTATGATTGGAGGGTATGCTGTAAATGACAAAGCCCATGCTGGCTTGCACGTGTTCAAAACGATGTTATCCGAGGCTGAACCAGATGGGGTGACCATGGTAAGTGCCATTAAAGCATGTGCTAATTTAGAAGATATAAAACTGGGAATGATGATGCATGGTTTGGTGATTGTTAGAGGCTTGGCATTTGATCTGTTTATAGGAAACTCATTGATAGATATGTATTCCAGGTGTTATGACCCAAAATTCGCATTTGAAGTTTTCAATGAGATGCCACAGAAAAACATTGTCTCGTTGAATTCGATGTTATCGGCATGTGTCCTCAATGAAAAGCACTGGGAAGCTCTATCGTTGTTATATTCAATGGAGACAGCAGGAATCGAGGCAGATGAGATTACGCTCATGAATATTCTTCAAATATGCAAGCATTTCACACAGCCGTTGCAATGTAAAGCGGTCCACTGTATAATGATACAGAAGGAAGTCGAAACAAACGAACTTTTGGTTAATTCTCTGATGGATGCGTATGCAAAATGCTATCTTGTTAGTCTTGCATATAAACTCTTTGAAAGGATGAGTCGAAAAGATGTGGTCTCTTGGAGTACAATGATTTCTGGGTTCACCCATTGTGGCAATCCTGATCAAGCAATGGCTACGTTCAAGGAAATGAATCGGGCAGAAGTGAAGCCGAATGAGATAACCATGATCAACCTTCTCGAGGCATGTGCACTTTCTGCAGATTTGAAAAGGTCAAAGTGGGCTCACGGGGCCACTCTCAAGAGGTGTGGTGGATCCGAGGTAACTGTTGGAACTGCCATTATCGACATGTACTCAAAATGCGGGGATGTAGTATCCTCTAGACGGGTTTTTGACCAAATCAGCAGGAAAAATGTTGTGTCTTGGAGTGTGATGATGAGAGCGTATGGAATGAACGGTCATGGGTCCAAAGTTGTAGATTTGCTGTCGGAAATGAAACGAAATGGCATCAAGCCGAATTCAGCCACTGCTTTATCGTTTCTATCAGCTTGCAATCACGCGGGATTGGTCGAAGAGGGGATTTTCTTTTTCATGTCCATGACTACAGAATATGAGATCTTACCCGACCGGGAGCATTACTCGTGTGCAGTGGACATGTTATGTCGAGCTGGAAAGTTAGAAAGTGCAGTGGAATTGATTAAGAGACTGCCTGAAGGAATGGAGGGCAGTGCAGGTTTATGGGGAGCAGTCCTGTGCTCTTGCAGAAGCCAAGCGAAGAGTGATCTCGTCTCGGAAGCCATCGATCGAGTGCTTCGGCTGGAGCCTCATAGCTCGTTCGGCTACATGATTGGCTCGAGCTTGTATGCCGCCAATGGGTTGAAAAAGAATTCCGCAAAGATGAGAAAGATGGCGAGAGAGCTGGGAGTGAAGGTTTCTGCTGGGTATAGTTTGGTTCATGTAGATGATATGGCTTACAGGTTCATTGCTGGAGATGGGTCTCACCCAGAAACAGGTAAGATACACTCCATGGTTAGCCAATTGCATGATATGATGAAGATGGATTTGATTACCAATTGA 2094 43.31 MKKAGTPITDFSVFPSVFKAFSNLSLKHGEYLHGYFIRQGLDSVTSISNSAIDFYMKWGDLGSARTLFDCLENRDSISWNIMVHGNLNYGSLEEGLQWFKKGRNACFLPNTSTMVLVIRACRKLEAYLEGLEFHGYVIRCGFWDIPSVQNSLLAFYADTDIDWAHKLFDEMPERDVISWSVMIGGYAVNDKAHAGLHVFKTMLSEAEPDGVTMVSAIKACANLEDIKLGMMMHGLVIVRGLAFDLFIGNSLIDMYSRCYDPKFAFEVFNEMPQKNIVSLNSMLSACVLNEKHWEALSLLYSMETAGIEADEITLMNILQICKHFTQPLQCKAVHCIMIQKEVETNELLVNSLMDAYAKCYLVSLAYKLFERMSRKDVVSWSTMISGFTHCGNPDQAMATFKEMNRAEVKPNEITMINLLEACALSADLKRSKWAHGATLKRCGGSEVTVGTAIIDMYSKCGDVVSSRRVFDQISRKNVVSWSVMMRAYGMNGHGSKVVDLLSEMKRNGIKPNSATALSFLSACNHAGLVEEGIFFFMSMTTEYEILPDREHYSCAVDMLCRAGKLESAVELIKRLPEGMEGSAGLWGAVLCSCRSQAKSDLVSEAIDRVLRLEPHSSFGYMIGSSLYAANGLKKNSAKMRKMARELGVKVSAGYSLVHVDDMAYRFIAGDGSHPETGKIHSMVSQLHDMMKMDLITN 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13453064 13455157 - Bpe021524.2 Bpe07g00674 106443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00674 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Bpe07g00674 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat 551 575 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat 249 276 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat 277 307 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat 77 101 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat 177 204 IPR002885 -
Bpe07g00674 697 Gene3D Tetratricopeptide repeat domain 228 328 IPR011990 GO:0005515
Bpe07g00674 697 Gene3D Tetratricopeptide repeat domain 329 434 IPR011990 GO:0005515
Bpe07g00674 697 Gene3D Tetratricopeptide repeat domain 144 227 IPR011990 GO:0005515
Bpe07g00674 697 Gene3D Tetratricopeptide repeat domain 30 130 IPR011990 GO:0005515
Bpe07g00674 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Bpe07g00674 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 107 423 - -
Bpe07g00674 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 206 670 - -
Bpe07g00674 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 323 - -
Bpe07g00674 697 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Bpe07g00674 697 TIGRFAM PPR: pentatricopeptide repeat domain 479 513 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat family 476 523 IPR002885 -
Bpe07g00674 697 Pfam PPR repeat family 375 423 IPR002885 -
Bpe07g00674 697 Gene3D Tetratricopeptide repeat domain 450 663 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00674 - - - qsu:112025233 822.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00674 Bpe-Chr7:13453064 Bpe02g01078 Bpe-Chr2:13895334 3.29E-20 dispersed
Bpe07g00674 Bpe-Chr7:13453064 Bpe11g01622 Bpe-Chr11:12360210 3.09E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013720 1 2 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00674 Bpe_Chr07 FPKM 3.497585 3.251185 4.974757 5.645475 3.065078 3.784241 2.333149 2.499007 3.447012 2.738701