Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00689 ATGGATGATAATGTTGAAACAAAAGGCAAAGTTTGTGTGACAGGAGCTTCTGGTTTTTTGGCTTCTTGGCTTGTTAAGCGGCTTCTTTTATCTGGGTATCATGTTGTTGGAACAGTAAGAGATCCAGGAAATGAGAAGAAGTTAGCACATTTGTGGAAGCTGGAAGGAGCGAATGAGAGGTTGCAGTTAGTGAAAGCTGATTTAATGAAAGATGGAAGCTTTGATGATGCTATCATGGCCTGCCATGGCGTCTTTCACACGGCATCCCCAGTTTTAAAGCCATCATCTGATCCGGAGGTATGTCGAGCTTTTCAAAATTCAAACATGACTATCACTTGGTTGAATTTCTGTTATTTTCTTTACCTACAGGCAGAAATCTTGAAACCAGCCATTGATGGCACGTTGAATGTGCTGCGATCATGCAAAAAGAATCCGTTTCTAAATCGTGTGGTGCTCACTTCATCTTCTTCGACTGTGAGAGCAAGAGATGATTTTGACCCGAAAATACCTCTGGATGAGTCATCTTGGAGCTCGATTGACCTGTGCAAAAGACTCCAGGTTTGGTACATCGTGTCGAAAACTCAGGCCGAAAAGGCTGCGTGGAATTTCTGCAATGAGAATGGGATTGATTTGGTCACTGTTCTTCCCTCCTTCGTAGTTGGTCCAAGTCTACCACCGGATTTATGTTCTACTGCATCGGACATTGTTGGTTTGCTGAAAGGAGAAACAGAGAAATTTCAGTGGCATGGGAGGATGGGTTATGTCCACATTGATGATGTTTCCCTCTGTCATATTCTACTCTTCGAGCACCAGAATGCCCGTGGGCGATACCTTTGCAGCTCAACCGTGCTCGACAACACGGATCTAGCGTCGTTGTTGTCAATCCGGTACCCATTTCTACCAATCAAAAGAAGGTTTGAGCCGTTAAACAGACCATATTATGAGCTCAACACCTCAAAGATTCAGAATCTGGGATTCAAGTTCAAGTCTATAGAAGAAATGTTTGATGATTGTGTTGAATCTCTTTTGAAGCAAGGCCATCTCTCTTTGGTC 1053 43.3 MDDNVETKGKVCVTGASGFLASWLVKRLLLSGYHVVGTVRDPGNEKKLAHLWKLEGANERLQLVKADLMKDGSFDDAIMACHGVFHTASPVLKPSSDPEVCRAFQNSNMTITWLNFCYFLYLQAEILKPAIDGTLNVLRSCKKNPFLNRVVLTSSSSTVRARDDFDPKIPLDESSWSSIDLCKRLQVWYIVSKTQAEKAAWNFCNENGIDLVTVLPSFVVGPSLPPDLCSTASDIVGLLKGETEKFQWHGRMGYVHIDDVSLCHILLFEHQNARGRYLCSSTVLDNTDLASLLSIRYPFLPIKRRFEPLNRPYYELNTSKIQNLGFKFKSIEEMFDDCVESLLKQGHLSLV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13527973 13529434 - Bpe026073 Bpe07g00689 106458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00689 351 PANTHER OS08G0515900 PROTEIN 7 99 IPR033267 GO:0009555|GO:0080110
Bpe07g00689 351 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 99 - -
Bpe07g00689 351 CDD FR_SDR_e 11 326 - -
Bpe07g00689 351 Pfam NAD dependent epimerase/dehydratase family 11 113 IPR001509 -
Bpe07g00689 351 Pfam NAD dependent epimerase/dehydratase family 127 272 IPR001509 -
Bpe07g00689 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 343 IPR036291 -
Bpe07g00689 351 Gene3D - 5 351 - -
Bpe07g00689 351 PANTHER OS08G0515900 PROTEIN 122 348 IPR033267 GO:0009555|GO:0080110
Bpe07g00689 351 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 122 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00689 - - - jre:109006685 541.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00689 Bpe-Chr7:13527973 Bpe11g01699 Bpe-Chr11:13265800 4.73E-80 dispersed
Bpe07g00689 Bpe-Chr7:13527973 Bpe05g00102 Bpe-Chr5:1910808 3.67E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g327 . . . . Bpe07g00689 . . Bma12g00893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005971 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 3 4 1 2 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00689 Bpe_Chr07 FPKM 12.646283 12.317652 2.452629 1.949781 10.480227 8.782142 9.269104 24.523554 24.195957 21.188982