Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00690 ATGATGATGGTGGGTTGCGAATGTGTCGCCTCGACGACCTTCTCCCTTCAATGCTCTCATCTCTCTCCTCCCATCTCTCCTTTCTCCAACAAAATTTCTGCACTCTCAGCTGCTTCAGTCTCTCCTTTCTTCTACACAAATTGTAGTATCACCCATCGATTGGAACTGTCTGTGTCTATTTCTTCCGGGTGCTGCTTGAGGACGAGGAGGCGTTTGGGGCCTCTTTCTGCTCTTCCGCAAAGTGGGTCTTCCGAGTTCACCGTTTGTGATACTGACAATGATCCGCCGCCATCGCTGCGGATTTCACCCAATTCAGTTTCACGACTAGAAGACCAAGAGGACGAGGGCCGAAAAGTAGGAGGAAATCCTTTTGGGGGAGGGAGTTCGGCGATACTCTCTTCGTGTTTGGTTGGTCTTCTTACCGGCATTGGTGTGGTGCTCTTCAATAACGCAGTCCATGAGATTCGTGACTTTTTCTGGGATGGGATCCCCTACAGAGGGGCATCTTGGCTGAGAGAAGAGCCCGTTCAAGACAGTTGGAAACGAGTCATTTTGGTTCCTGCTTGTGGTGGCTGTCTTGTTAGCATTTTAAATCTGCTCAGAGGTTCTACTGCCTTGCGATTAGACAACCAATATGATTCTTCTCCTCTTACCGAAGTGGGTTCACCTGCGCAAATTGGAAGCAGAAATTCCTTTTCTAATCAAGTGAAGGCAGCCATAAAGCCATTTCTGAAAGCGGTTGCCGCCTGTGTAACGCTTGGTACGGGAAATTCCTTGGGCCCAGAAGGTCCCAGTGTAGAGATAGGCGCTTCCATAGCAAAAGGGGTTTTTAGTTTGACCGAGAGAAATGCCCAAGGAAAGCTCTCCTTGCTAGCTGCAGGATCAGCAGCTGGGATATCTTCTGGGTTCAATGCTGCAGTTGCTGGTTGTTTTTTTGCTGTAGAGTCAGTTTTGTGGCCATCACCGGCAGATTCATCGTTATCTCTTACAAACACCACTTCAATGGTTATTTTAAGTGCGGTCATTGCTTCTGTAGTTTCAGAAATCGGCCTTGGTTCTGAGCCGGCATTTAAGGTTCCTGAGTATGACTTCCGCTCTCCAAGTGAGCTTCCTCTGTATCTGTTGCTGGGTGTTCTGTGCGGCTTGGTCTCATTGGCCTTTTCTCGGTTTACATCATACATGTTGGCATATTTTGACAATCTTCATAAGAAATATGGCATTCCAAAGGCTGTATTTCCTGTAATTGGCGGAGTCACTATTGGACTAATAGCCCTGGAATATCCTGAAATACTTTACTGGGGTTTTCAAAATGTTGATATTTTGTTGGAATCTCGCCCATTTGTGAAAGGACTTTCAGCTATCTTATTAGTTCAGCTCGTAGCTGTAAAGATCCTGGCCACCTCTTTGTGCAGAGCCTCTGGACTGGTTGGAGGCTACTATGCACCATCCCTCTTTATTGGGGGAGCAACAGGAATGGCTTATGGGAAATTTGTTGGTCTTGCAGTTGCTGGGTCTAATCCTGTTTTTCAACTCTCATTCTTGGACGTGGCATCACCTCAAGCATATGGCCTGGTTGGGATGGCAGCTACACTTGCAGGGGTTTGCCAGGTGCCTCTTACTTCAGTCTTGCTGCTCTTTGAATTGACACAAGATTACCGAATAGTGCTTCCACTTCTTGGAGCTGTAGGGGTCTCATCATGGATTACATCTGGACAGGCAAAGAGAGGAGATGGGAAGGAGATAAAGAAACAAAAACTGGAAAATATTTTTATTAATCAACAATCTGAACGTCCTACTGAAATTTCTCTCAGTTCTGCAACTTCTGAAAGAGCAACTTATGCAAGTGATCTATGTGAAGTTGAAAGTTCACTATGTACAGATGATTCAAATAATGATATTGTAGATTTAGAAAAGAGAATTAGTGTTTCAGAAGCCATGAAAACTAGATATGTGACGGTCTTGTTGAGCACTTTGGTTACAGATGCCTTGAGTCTCATGCTATCAACAAAGGAGTCTTGTGCCGTTGTTGTAGATGAAAATAACAATTTGATTGGCTTCCTTACACTTGAAGGCATTCAAGAATTTTGCACATATGCATCAACAAGCAAAAGAGCCAAGGATATTTTGGTATCTGAAATGTGTTCTTCGGATGACAAAATATGTCAATTGCCATGGACAGCCACTCCCAGTATGGATCTTTATACAGCTCAAATGAATATGAAAAAGGTCGGTGTAAGCTTAGTTCCCGTTGTTGAGGAGAAAAACAAAGATCGCCGGAAGAATCCAGTTGGCGTTTTAGACTCTGAATGTATCAGCTTGACTTGCAGAGCTATTGCAGCTAGAGATTCTCTCCAGTGA 2358 44.61 MMMVGCECVASTTFSLQCSHLSPPISPFSNKISALSAASVSPFFYTNCSITHRLELSVSISSGCCLRTRRRLGPLSALPQSGSSEFTVCDTDNDPPPSLRISPNSVSRLEDQEDEGRKVGGNPFGGGSSAILSSCLVGLLTGIGVVLFNNAVHEIRDFFWDGIPYRGASWLREEPVQDSWKRVILVPACGGCLVSILNLLRGSTALRLDNQYDSSPLTEVGSPAQIGSRNSFSNQVKAAIKPFLKAVAACVTLGTGNSLGPEGPSVEIGASIAKGVFSLTERNAQGKLSLLAAGSAAGISSGFNAAVAGCFFAVESVLWPSPADSSLSLTNTTSMVILSAVIASVVSEIGLGSEPAFKVPEYDFRSPSELPLYLLLGVLCGLVSLAFSRFTSYMLAYFDNLHKKYGIPKAVFPVIGGVTIGLIALEYPEILYWGFQNVDILLESRPFVKGLSAILLVQLVAVKILATSLCRASGLVGGYYAPSLFIGGATGMAYGKFVGLAVAGSNPVFQLSFLDVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGVSSWITSGQAKRGDGKEIKKQKLENIFINQQSERPTEISLSSATSERATYASDLCEVESSLCTDDSNNDIVDLEKRISVSEAMKTRYVTVLLSTLVTDALSLMLSTKESCAVVVDENNNLIGFLTLEGIQEFCTYASTSKRAKDILVSEMCSSDDKICQLPWTATPSMDLYTAQMNMKKVGVSLVPVVEEKNKDRRKNPVGVLDSECISLTCRAIAARDSLQ 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13530435 13541476 - Bpe021537.1 Bpe07g00690 106459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00690 785 PRINTS Chloride channel signature 296 315 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe07g00690 785 PRINTS Chloride channel signature 475 495 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe07g00690 785 PRINTS Chloride channel signature 538 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe07g00690 785 PRINTS Chloride channel signature 520 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe07g00690 785 PRINTS Chloride channel signature 245 264 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe07g00690 785 ProSiteProfiles CBS domain profile. 646 702 IPR000644 -
Bpe07g00690 785 SUPERFAMILY CBS-domain pair 639 756 IPR046342 -
Bpe07g00690 785 Pfam CBS domain 642 692 IPR000644 -
Bpe07g00690 785 Pfam Voltage gated chloride channel 238 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe07g00690 785 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 121 777 - -
Bpe07g00690 785 CDD CBS_pair_voltage-gated_CLC_euk_bac 646 772 - -
Bpe07g00690 785 MobiDBLite consensus disorder prediction 82 106 - -
Bpe07g00690 785 Gene3D Clc chloride channel 127 597 - -
Bpe07g00690 785 MobiDBLite consensus disorder prediction 82 121 - -
Bpe07g00690 785 CDD Voltage_gated_ClC 138 566 - -
Bpe07g00690 785 Gene3D - 627 772 IPR046342 -
Bpe07g00690 785 SUPERFAMILY Clc chloride channel 132 570 IPR014743 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00690 - - - mcha:111011346 862.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00734 Bpe-Chr3:27433462 Bpe07g00690 Bpe-Chr7:13530435 1.22E-131 dispersed
Bpe07g00690 Bpe-Chr7:13530435 Bpe09g00096 Bpe-Chr9:661404 5.53E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00690 Bpe_Chr07 FPKM 9.15847 10.002863 9.304083 9.969045 4.990716 4.246749 4.215963 0.990042 1.08359 0.812686