Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00704 ATGGATTTCTCGCTCAAGAAGTCTTTTAAATCCTACGCCTCTTTGAAGAGTGGTAGGAAGGTTTCTGCTAAAGGAACTACAGATTGTACTCCTGAACAGCTCCCCATTCTATTGGACTCGGATTCTGAAGATCGAACTCGTCTTCTTGATCGGCGCCTGTCAATGAGGGACACTGAACTCCCTGTGCGTAGCGAAGTGATCGTTAAAATCGACGACGGCGATTCTTCCACTGGCTCGAGAACGATGGATTCAAAGAACACTGGCGGCAACATATTCCGGAACTCTAGTTATGATTTCTGGAACGACGTTGAAGACGGAGATAATGCGACTACTTCTACTGCTAGAACGGGTGATAGCTTTGATTTGGCGCGACAACGGCCAGCTTTGGACGATCCACCTTCCAAGCTGATTGGACAGTTCTTGCATAAACAGAAAGCTTCTGGTGATATATCACTGGACATGGATTTAGAAATGGATGAGCTCTGTCGCGATAAAACTTTGCCTCCAGTCGTGGAGTCTCCGGTGGTTCGGACATCTAAGGAAATCAAAGTTTCTTTCCAGCCTAATAACGAGGCTAATAACAACGACATGGTTCGAAGGCGGTGCAGAGACTCGTCGGACCAGGAAGAACACGAGAGACAACAGCAACAAGATCGTCGCATGCCTTCCAATGTCGGAGGTAATCACAAGGACGGTGGAGCCGAGGTTGTAAAGTGCACATCGAATTCTTCATTTCAGAGAGAATATTCATTTCAGAGGAACTCTGGCTTGTTGAAGACGAAAACAAGGTCTAGGTTACTCGACCCTCATGCAGAGCCGGACAGGAGGTCCGACCGGATGCCTCCGAAGTCGGGGCAAGTGCGATCTGGGTTGTTGTCTAGAGTTATGGATGATGAAGAAGATGATCCTTTTCTGGGGGAGGATCTACCAGATGAGTATAAAAGGGCTGATTTCAGCATTTTGACTCTGCTTCAATGGGTGAGTTTGATTCTGATCATAGCAGCTTTAGTTGTCACACTTTATATTCCTTTTTTGAGGCGCAAGAATCTGTGGAAACTCAAACTGTGGAAATGGGAGTTGATGGTTTTCGTTCTGATATGTGGAAGATTGGTATCTGGTTGGGGGATTAGGATAGTTGTGTTCTTCATAGAGAGAAACTTTCTGCTTCGCAAAAGGGTTTTATATTTTGTCTATGGAATTCGAAAAGCTGTCCAGAATTGTATCTGGCTTGGTCTTGTCTTAATTGCCTGGCATCTGCTCTTTGACAAGAAGGTCCAGAGGGAAACCAACAGTAAAGCACTTGAATATGTAACTAAGATTCTTGTGTGCCTCTTGGTCGGCACCCTACTTTGGCTGGTTAAAACTCTCATAATCAAAGTCCTGGCCTCCTCATTCCATGTCAGCACTTATTTTGATCGAATTCAGGATTCGCTTTTCAACCAATATGTAATTGAGACACTATCTGGACCGCCATTGATTGAGATTCAAAAGAACGATGAAGACGATGAAAAGCTCGCCAACGAGGTCCGAAAGTTGCAGAATGCAGGGGCTACCGTCCCTCCTGATCTTAAAGAAACCATGAAAGGAGGGAGGGTGATAGGGAGTGGAGGGCTCCAGAAAAGCCCCCGTGGGAAAAGCGAAAAGCTTTCTCGGACAATGTCTAATAAGGGAGATGAAGGTATTACCATTGACCATTTACACAAGCTGAGTCCTAAAAATGTGTCAGCTTGGAAAATGAAGAGATTGATTAAGTTAGTCCGGAATGGGGCTCTTTCTACGCTGGATGAGCAGATAAAGGACTCCACTCAGGGGGATGAGTCTGCTACCAAGATTAGAAGTGAAGTAGAGGCAAAAACTGCAGCCAGGAGAATTTTTCTGAATGTGGCCAAGCAGGGAAACAAGTACATCTATCTCGAGGATATAATGCGCTTCATGCCAGAAGATGAAGCTTTGAAAACTTTGAATCTTTTTGAAGGAGCATCTGAGAGCAGGAGAATAAGCAAGGCTTCTTTGAAAAACTGGGTGGTAAATGCGTTTAGAGAGCGCAGGGCCCTTTCTTTGACACTGAATGATACCAAAACAGCCGTGAACAAGCTTCATAAAACGGTGAATGTGGTGGTTGGCATCTTAATCGTGGTCATATGGTTGCTCATACTCGAAATCGCCACCAGCAAATTTCTCCTTTTTGTTAGCTCCCAACTCGTTCTCGTTGCATTCGTATTTGGAAACACGTGCAAGACTGTGTTTGAAGCAATAATCTTTCTATTTTCGATGCATCCATTTGACGTTGGCGATCGGTGCGAAATCGATGGAGTTCAGATGGTTGTAGAAGAAATGAACATCTTAACAACCGTTTTTCTGAGATATGATAACCAGAAGATAATGTATCCGAACAGTGTTCTTGCAACTAAAGCCATACATAACTTCTACCGCAGTCCTGACATGGGAGATGGTGTTGAATTCTGCCTCCATATATCTACTCCTGCGGAAAAGATTGCTGTAATTAGACAGAGAGTACTGAGTTACATAGAGAACAAGAAGGAGCATTGGCATCCCAATCCCATGATTGTAGTGAAGGACTTGGAAGAGTTAAACAGGCTGAGAATAGCAGTCTGGCTGACGCACAGAATGAACCATCAAGACATGGGGGAAAGGTGGGCTAGGAGAGCCCTCCTGGTCGAAGAAATGGCAAAAATTTTCAGAGAACTCGACATCCAGTATCGCCTTTACCCGCTCGACATTAATGTCCGTTCGATGCCTCCCTCGAGCTCCCCTGGTTTTCTATCTAACTAG 2793 44.83 MDFSLKKSFKSYASLKSGRKVSAKGTTDCTPEQLPILLDSDSEDRTRLLDRRLSMRDTELPVRSEVIVKIDDGDSSTGSRTMDSKNTGGNIFRNSSYDFWNDVEDGDNATTSTARTGDSFDLARQRPALDDPPSKLIGQFLHKQKASGDISLDMDLEMDELCRDKTLPPVVESPVVRTSKEIKVSFQPNNEANNNDMVRRRCRDSSDQEEHERQQQQDRRMPSNVGGNHKDGGAEVVKCTSNSSFQREYSFQRNSGLLKTKTRSRLLDPHAEPDRRSDRMPPKSGQVRSGLLSRVMDDEEDDPFLGEDLPDEYKRADFSILTLLQWVSLILIIAALVVTLYIPFLRRKNLWKLKLWKWELMVFVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGIRKAVQNCIWLGLVLIAWHLLFDKKVQRETNSKALEYVTKILVCLLVGTLLWLVKTLIIKVLASSFHVSTYFDRIQDSLFNQYVIETLSGPPLIEIQKNDEDDEKLANEVRKLQNAGATVPPDLKETMKGGRVIGSGGLQKSPRGKSEKLSRTMSNKGDEGITIDHLHKLSPKNVSAWKMKRLIKLVRNGALSTLDEQIKDSTQGDESATKIRSEVEAKTAARRIFLNVAKQGNKYIYLEDIMRFMPEDEALKTLNLFEGASESRRISKASLKNWVVNAFRERRALSLTLNDTKTAVNKLHKTVNVVVGILIVVIWLLILEIATSKFLLFVSSQLVLVAFVFGNTCKTVFEAIIFLFSMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRYDNQKIMYPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPAEKIAVIRQRVLSYIENKKEHWHPNPMIVVKDLEELNRLRIAVWLTHRMNHQDMGERWARRALLVEEMAKIFRELDIQYRLYPLDINVRSMPPSSSPGFLSN 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13646352 13649712 + Bpe021550.1 Bpe07g00704 106473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00704 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 922 - -
Bpe07g00704 930 PIRSF Memb_At2g17000 55 930 IPR016688 -
Bpe07g00704 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 922 IPR016688 -
Bpe07g00704 930 MobiDBLite consensus disorder prediction 262 292 - -
Bpe07g00704 930 Gene3D - 760 809 IPR023408 -
Bpe07g00704 930 Pfam Mechanosensitive ion channel 701 906 IPR006685 GO:0016020|GO:0055085
Bpe07g00704 930 MobiDBLite consensus disorder prediction 519 557 - -
Bpe07g00704 930 MobiDBLite consensus disorder prediction 185 236 - -
Bpe07g00704 930 MobiDBLite consensus disorder prediction 196 218 - -
Bpe07g00704 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Bpe07g00704 930 Coils Coil 495 515 - -
Bpe07g00704 930 MobiDBLite consensus disorder prediction 263 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00704 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1238.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00704 Bpe15g00798 CCT
Bpe07g00704 Bpe15g00798 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00264 Bpe-Chr4:1727619 Bpe07g00704 Bpe-Chr7:13646352 2.55E-114 dispersed
Bpe07g00704 Bpe-Chr7:13646352 Bpe13g00878 Bpe-Chr13:14919180 9.19E-178 dispersed
Bpe15g00798 Bpe-Chr15:18202656 Bpe07g00704 Bpe-Chr7:13646352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00947 . 109 496 Mechanosensitive Ion Channel Family AT4G00290 59.6 1.5e-118 423.3
Bpe14g00484 . 18 648 Mechanosensitive Ion Channel Family AT5G10490 55.8 7.7e-182 634.0
Bpe14g00484 . 19 456 Mechanosensitive Ion Channel Family AT1G58200 69.9 1.5e-177 619.8
Bpe07g00704 CCT,ECH 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.0 1.4e-247 852.8
Bpe15g00798 CCT,ECH 73 896 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.2e-245 845.5
Bpe07g00704 CCT,ECH 63 925 Mechanosensitive Ion Channel Family AT3G14810 52.5 3.1e-236 815.1
Bpe15g00798 CCT,ECH 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.7 2.1e-229 792.3
Bpe07g00704 CCT,ECH 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.3 4.1e-281 964.1
Bpe15g00798 CCT,ECH 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 3.1e-260 894.8
Bpe15g00798 CCT,ECH 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.8 1.6e-224 776.2
Bpe07g00704 CCT,ECH 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.3 2.3e-223 772.3
Bpe04g00114 . 83 776 Mechanosensitive Ion Channel Family AT5G12080 57.0 1.3e-214 743.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00704 Bpe_Chr07 FPKM 0.952948 0.975547 3.24704 2.906354 14.164001 12.387563 13.788727 1.904747 1.57413 1.184034