Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00706 ATGAACAAGAGAGCAAAAACGAGCATCGAGAATGCTCTGGCAGATGTATTGAAACGGGAGGTCGGCGAGCTTTCCGCTAGGAATTTCGCCCACCGCCTCGCTGCCTCCGAGGATCTTGTGCTCCGATTTGATATTGACAGGAAATTAGAAAAGCACAGAGGTTGTGTGAACACATTGAGCTTTAGTGATGATGGCGACATTCTAGTCTCAGGCTCGGATGACAGGCATGTAATTCTCTGGGATTGGGAAACTGGGCGGATCAAGCTTTCCTTTCATTCTGGCCACAGTAACAATGTTTTCCAGGCAAAGATCATGTCTGGCACTGATAATCGAAGCATTGTTACTTGTGGTGCAGATGGGCAGGTGAGACATGCTCAAATTCTTGAAAATGGACGTGTGGAGCCTGTTCTGCTTGCTAGACATTATGGAGGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCGCATATATTTTTTTCTTGTGGTGAAGATGGATTGGTGCAACACTTTGATTTAAGAACTGGAGGTGCAACTGAACTTTTCACATGCCAAGCTGTTAACAGACAGAGACGGTACACATCACTCATCCAACTAAATGCAATTTCAATTGATCCAAGGAACCCAAATCTCTTCGCTGTTGCTGGGTCAGATGAGTACGCTCGACTTTATGATATACGAAAATACAAGTGGGATGGATCATCTGATTTTGGTCAACCTATCAACTACTTTTGTCCCACACATTTGATTGGTGACGGCAATGTTGGAATTACAGGCTTGGCCTTTTCAGAACTAAGTGAACTTCTTCTCTCATACAATGATGAAAATATATATCTTTTTACTCGGCATATGGGTTTGGGATCAAATCCCATTCCAGCCTCTCCAGAACCTGTTCCTTGTGATGCAAAGGAAGTCGGGACTGATGATGATCCCATCACATCACTGGTGCATTCTGGTGAAGTCGTTTCTCCTCAAGTTTACAAGGGGCACAGAAACTGTGAAACACTGAAGGGTGTAAACTTTTTAGGGCCTAAATGTGAGTATGTCACGAGTGGTTCTGATTGTGGTCGTATATTCATTTGGAAAAAGAAAAGTGGGGAGCTGATTCGGGTCATGGAAGCAGATAAGCATATTGTCAACTGTATTGAGTGTCATCCTCATAGCACTGTTCTTGCAAGTAGCGGAATAGAAGATGACATAAAGATATGGATCCCAAAGGCCCTGGAGAGAGCTAAGCTTCCTGAAAAAATTGAACAGGTACGCTTTGCCATTCTGGTCAATTTTTGTTAG 1287 43.9 MNKRAKTSIENALADVLKREVGELSARNFAHRLAASEDLVLRFDIDRKLEKHRGCVNTLSFSDDGDILVSGSDDRHVILWDWETGRIKLSFHSGHSNNVFQAKIMSGTDNRSIVTCGADGQVRHAQILENGRVEPVLLARHYGGAHKLAIEPGSPHIFFSCGEDGLVQHFDLRTGGATELFTCQAVNRQRRYTSLIQLNAISIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSSDFGQPINYFCPTHLIGDGNVGITGLAFSELSELLLSYNDENIYLFTRHMGLGSNPIPASPEPVPCDAKEVGTDDDPITSLVHSGEVVSPQVYKGHRNCETLKGVNFLGPKCEYVTSGSDCGRIFIWKKKSGELIRVMEADKHIVNCIECHPHSTVLASSGIEDDIKIWIPKALERAKLPEKIEQVRFAILVNFC 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13652201 13656213 + Bpe021551.1 Bpe07g00706 106475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00706 428 Pfam WD domain, G-beta repeat 48 81 IPR001680 GO:0005515
Bpe07g00706 428 SMART WD40_4 42 81 IPR001680 GO:0005515
Bpe07g00706 428 SMART WD40_4 188 224 IPR001680 GO:0005515
Bpe07g00706 428 SMART WD40_4 319 361 IPR001680 GO:0005515
Bpe07g00706 428 SMART WD40_4 364 403 IPR001680 GO:0005515
Bpe07g00706 428 SMART WD40_4 84 126 IPR001680 GO:0005515
Bpe07g00706 428 SMART WD40_4 132 171 IPR001680 GO:0005515
Bpe07g00706 428 Gene3D - 35 404 IPR015943 GO:0005515
Bpe07g00706 428 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 7 421 - -
Bpe07g00706 428 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 7 421 IPR045151 -
Bpe07g00706 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Bpe07g00706 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Bpe07g00706 428 SUPERFAMILY WD40 repeat-like 42 402 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00706 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - zju:107427406 644.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00134 Bpe-Chr2:915493 Bpe07g00706 Bpe-Chr7:13652201 1.37E-19 dispersed
Bpe07g00706 Bpe-Chr7:13652201 Bpe01g00772 Bpe-Chr1:7632574 2.00E-09 dispersed
Bpe07g00706 Bpe-Chr7:13652201 Bpe06g00115 Bpe-Chr6:1804140 1.02E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00706 Bpe_Chr07 FPKM 13.659341 14.468309 20.514456 18.469528 26.721659 28.435902 30.052244 17.125137 20.424761 23.925224