Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00720 ATGCGTCGAGGGTTCTCCGTCTTGCTCCAGCCCCGTTGCCTCCTCCTCTTTCTTGTCCTCTTGATCTTTGTAATTTTCGTTTTCTCCGCCCCCAAAAGTGGTGAAGAAAAACCAGAAGAAGAACCTGAAATTACCCACAGGGTATATTTGGATGTTGATATTGATGAACAACGGTTAGGTAGGATTGTGATTGGATTATATGGCGATGCTGTACCTAAAACTGTAGAAAACTTCAGGGCTTTGTGCACAGGAGAAAAAGGAAAAACTACTAGTGGAAAGGTACTCTGGTACAAGGGGTCACCATTTCATCGTATAATATCTGGCTTCGTGATTCAAGGAGGTGATATTGTATATGGTGATGGGAGAGGATATGAATCTGTCTACGGTGGAACATTTGCTGATGAGAATTTCAAAATCAAGCACTCACACCCAGGTGTTGTTTCTATGGTTAACTCAGGACCAGATTCGAATGGGTCACAATTTTTTATCACCACAGTCAAGGCTAGCTGGTTAGATGGAGAACACGTTGTCTTTGGAAAGGTCATTCAAGGAATGGACAATGTATATGCCATTGAAGGTGGGGCAGGAACCTACAGCGGAAAACCAAGAAAGAAGGTCACCATCGCTGACTCAGGAGAGATACCCAAGAGCAAGTGGGACGAGGAGAGATGA 672 44.05 MRRGFSVLLQPRCLLLFLVLLIFVIFVFSAPKSGEEKPEEEPEITHRVYLDVDIDEQRLGRIVIGLYGDAVPKTVENFRALCTGEKGKTTSGKVLWYKGSPFHRIISGFVIQGGDIVYGDGRGYESVYGGTFADENFKIKHSHPGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDNVYAIEGGAGTYSGKPRKKVTIADSGEIPKSKWDEER 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13765876 13769430 - Bpe021564.1 Bpe07g00720 106489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00720 223 Gene3D - 35 220 IPR029000 -
Bpe07g00720 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 30 222 - -
Bpe07g00720 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
Bpe07g00720 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 SUPERFAMILY Cyclophilin-like 43 214 IPR029000 -
Bpe07g00720 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 211 IPR002130 GO:0000413|GO:0003755
Bpe07g00720 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 30 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00720 - - - csv:101216978 361.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00720 Bpe-Chr7:13765876 Bpe08g00073 Bpe-Chr8:390342 1.70E-72 dispersed
Bpe02g02154 Bpe-Chr2:22836284 Bpe07g00720 Bpe-Chr7:13765876 5.39E-16 transposed
Bpe12g00046 Bpe-Chr12:376246 Bpe07g00720 Bpe-Chr7:13765876 7.52E-20 transposed
Bpe13g01420 Bpe-Chr13:19440333 Bpe07g00720 Bpe-Chr7:13765876 3.57E-08 transposed
Bpe15g00827 Bpe-Chr15:18346034 Bpe07g00720 Bpe-Chr7:13765876 1.48E-62 wgd
Bpe15g00550 Bpe-Chr15:16584799 Bpe07g00720 Bpe-Chr7:13765876 2.43E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012364 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00720 Bpe_Chr07 FPKM 30.870049 33.767162 9.192298 7.450983 6.298417 5.817399 5.704593 4.245095 4.296459 4.222948