Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00726 GTGTTTGGTTATTCAGATGAAGTTTCGGCCATTGTCATTGACCTTGGTTCACACACTTGTAAAGCTGGTTATGCTGGGGAAGACGCTCCCAAGGCGGTGTTTCCCTCCGTTGTCGGCTCAATTGACCAAATGGAAGTTGACGACCCAGTAAACACTGACAAAAACTCTGTATTGGCAGTTGATTCTAAAATTAGTAAAAATATTGATACAGAAAAACTGAAGGGTAAACGTAAATTATATGTTGGGTCTCAATCATTAGGATTCCGACGCGATCACATGGAGGTAGTGCTATCTCCTATAAAAGATGGTGTTGTTGTCGACTGGGATATGGTTGATAGCATTTGGGATCATGCCTTCAGGGAATGCCTTCTGGTTGATCCTAAAGAGCACCCAATGCTACTTGCGGAACCATCTTTTAACTCACAACAGCAGAGAGAAAGGACAGCAGAACTTATGTTTGAAAAATACAACGTTCCTGCATTATTTCTTGCAAAAAATGCAGTTCTCACATCTTTTGCTTCTGGGCGTGCTACCTCCTTAGTTGTTGATAGTGGTGGAGGATCGACTACAGTTGCTCCAGTGCATGATGGTTATGTTCTTCAAAAGGCTGTGTCATCTTCTCCTATTGGAGGTGAAGTTCTGACTGATTGCTTGTTAAAAAGTTTGGAGAGCAAAGGTATCGTGATAAAGCCCAGGTACTCATTCAAAAGAAAGGAAATACGTCCAGGAGACTTTCAGGCAGTGGATCTTGATTTTCCAAATACCACAGAAAGTTATAGACTTTACTCCCAGAGGGTAATTGCCAGTGATATCAAGGAATGTGTCTGTCGGGCCCCTGATTCTCCATATGATGAGAGTGCATATTCAAACATTCCAATGACCCCTTACGAACTTCCTGATGGCCAGACTATCGAAATTGGTGCGGATAGATTCAAGATCCCTGATGTTCTTTTTAATCCATTCCTTTTACAGACAATTCCTGGTATGGAGACTTTTGCTGAGACTGCATCTATGGTTCGTGGACTGCCACAAATGGTTATAGAAAGCATAAACAAGTGTGATGTGGACATTCGAAGAGAACTTTTCAGTAGTATACTGCTTGCTGGTGGGACAGCATCAATGCAGCAGTTGAAGGAGCGTCTTGAGAAAGACTTGTTAGAGGAGTCTCCCCAAGCTGCTCGTGTTAAAGTTTTAGCAAGTGGAAATGCAACGGAAAGAAGATTTAGCGTCTGGATTGGAGGTAGCATATTGGCTTCCCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAGTCTGAGTTAGTATTCTCCTATCATATTTCGTTTACTGTCCATTTGATATGA 1341 42.13 VFGYSDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPVNTDKNSVLAVDSKISKNIDTEKLKGKRKLYVGSQSLGFRRDHMEVVLSPIKDGVVVDWDMVDSIWDHAFRECLLVDPKEHPMLLAEPSFNSQQQRERTAELMFEKYNVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVSSSPIGGEVLTDCLLKSLESKGIVIKPRYSFKRKEIRPGDFQAVDLDFPNTTESYRLYSQRVIASDIKECVCRAPDSPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPFLLQTIPGMETFAETASMVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSELVFSYHISFTVHLI 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13806662 13814051 + Bpe021570.1 Bpe07g00726 106495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00726 446 Gene3D - 185 385 - -
Bpe07g00726 446 Gene3D - 3 184 - -
Bpe07g00726 446 PANTHER ACTIN 6 432 IPR004000 -
Bpe07g00726 446 PANTHER - 6 432 - -
Bpe07g00726 446 SUPERFAMILY Actin-like ATPase domain 175 432 IPR043129 -
Bpe07g00726 446 Gene3D Actin; Chain A, domain 4 211 324 - -
Bpe07g00726 446 Pfam Actin 6 432 IPR004000 -
Bpe07g00726 446 SMART actin_3 8 441 IPR004000 -
Bpe07g00726 446 Gene3D - 391 435 - -
Bpe07g00726 446 SUPERFAMILY Actin-like ATPase domain 6 182 IPR043129 -
Bpe07g00726 446 CDD NBD_sugar-kinase_HSP70_actin 98 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00726 K11340 ACTL6A, INO80K; actin-like protein 6A - zju:107417842 757.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00726 Bpe-Chr7:13806662 Bpe15g01288 Bpe-Chr15:21213105 3.92E-83 dispersed
Bpe14g01242 Bpe-Chr14:9350181 Bpe07g00726 Bpe-Chr7:13806662 8.61E-14 dispersed
Bpe07g00726 Bpe-Chr7:13806662 Bpe08g00106 Bpe-Chr8:572280 6.80E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g350 . . Bda06g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0697 . . . . . . . . . . . Bpe07g00726 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00370 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00726 Bpe_Chr07 FPKM 2.624233 2.558647 5.605301 5.027764 14.337 17.047106 15.238837 1.90708 0.786243 1.213845